Chr:
Chr1
Start:
7054118
End:
7055151
Strand:
-
Ref_name:
OSA-LNCN0158
Sequence
(OSA-LNCN0158.1):
GUUGUGUAGUAGUGACAGAGAAAAUUGAGAUGGCAUAUAUUCAGCACAGAUCACUAAUUUUGAAAAAAAGCAAAUCCAAUGGCAUGACUUGGUGUUAGAUAUAGCUCUCUAUGAAUAAAAAUCUAGAAAAUGAGGUGUAUAAAUAUCUAGAAAGCGACGUUUGCUUAGAGCUUUGGGUGGAUGAGAAGAAAUUAACAUGAGAUUUGUGAUCUCGGUCUUCUUCCCGGCCCAGCAGUGGUGUCCUUUUACACUUCUCCAACAACGACAUGAUGCCGACCAGGAGUUUUGGGGUAAGGGUGAAAAGAGGUUUUCUUCACGCUUAGCAGACUACAAGUAUGUGACGAUGACACUAGCCUAGUGGAGAAGGGGUUUUUCUCCCAGCGUAUGGGCGAAGACACGAUGGACCGGUGGUGGGCAGCCGAAAGGACUAUGGUGUGCACAUAUGACUCUUUUGUAGUGGGUCACAUGCAUAUGCAAUUAUGCAUAUGGACCCGCUCAAUGUAAGACCUACAAAGUUAGAGGGCAAUAUUUUAGAGGAUCUUUUUUUCUAUGUUCACAACAACGGUUGGAUCAUGAACCUAUGGGCAAGAGGGCUAGGCUGGUGGACAAAGUCAGGCGUUAGCGGUGAGAGCGUGGGAUCUAGAGUGGUUGAAAAGUAGAGCGGCCAUGGCAUCUGCUGCUGUAUGAGUAACCGGUAUAAUAAAACUGACGAGCAGGGACACCUCGUUCCGGUCAGUUUAGGUUGGAGGGUGGUGGUGGGUUGGGGAUAGGCUCAUGAUCCGACGGUGUGGCGAAAUCGCGUCGUACAGAGAGAGAGGAACAAUAAAGGAAGUAAUCAACGGUUGCAUCUGCUGAUCUGCAAGUGAGUAGUACCACAACAAGUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.68%
ME_num:
MEP:
20.12%
HE_num:
HEP:
36.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.84
Avg Expression:
17.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.17216035891837 | 0.000778627462644005 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.11471577172915 | 8.53964510906705e-05 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.1092343905202 | 4.82033401015339e-08 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.41204766504194 | 1.73820193865123e-09 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.10919600681926 | 8.27307557442378e-06 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.96932419088226 | 1.56649065849637e-07 |
| 7 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.96939316613584 | 1.64583077766464e-07 |
| 8 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.96951287126518 | 1.5803553387876e-07 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.19730335362405 | 2.72266300864671e-61 |