OSA-LNCN0153


Function Link


Basic Info

Chr:

Chr1

Start:

6883812

End:

6885838

Strand:

+

Ref_name:

OSA-LNCN0153

Sequence
(OSA-LNCN0153.1):

AUCGACAUGAAAAGGUCUAUGAGGAAGCGGGAACUGCACAUGUAUUGGCCGGCUAGGUGAUGGUGACGCCGCGCGUAGACGGCGUUUUCCGGACGGAGCCAUGUUCGAUCGAUCACGCAAGGGAUGUUGAGAGCAUGGUUGUGUUUGAUCGCCCAUGAUUGGGGCCCGGUUUCGUGUAGCGUUUGGCCAACCCAUCAUGUGUUUGCCACGCGUAUGCUCCCUCGGGUCGGAAAGAAAGACGUAAAUUGUUUUGGAUCUCUCGGUAUCAACAUUAUAUAUCAAGGGCGGAACUGCCCAUUGGGCAGCAUGGGGGCGGUCGGCCAGCUACGGCCCGCGUCGCCCCAACCCCCCACACCCCCUUGGGCCAUAUCUAUUCACAAAUUGCCAAAUUGGCCCAUAAGUAGAAAGCCCAUCAGUGUCCAAUUCACCUUCUGUCUCGCUACCCCACGCGCGACGUUUAGUUUCUCCACGCAUCGCCCGCUCGCCGAGAGAGACAGAAGCCGAGACGUCGACUUACUCCGUCUCCGCGCCAGGCGCCACGCGCAGCGACACCUGCAGGCCGCCACCGCCGGCCGCCGCACACGGCGCGCACCGCAGAGGACGAGACGACGACGCCUAGCUGCCGCCGCCCGCCGUCCGGCGCCCUAGCGAGCAGCGAUGGCCGAUGGCCGACGGCCGGCCGCCCGGCCCGAUGCCGCUCGCAGCCGGCCAGGCCACCGCCCGCCAGCGCCAAGGUCCACCAGCGCCAAGGCCUCCUCUAGUCCUCCUGACCUCCCCGCGAGUCACGACCUGCCGUCUGCUGACCUCGCCUCCUGCUCGGGCAGCUCGACGCCAGCCGCUGGCGCUAGCGAAUCAGCCGGUAGGGGGAGCACAGAGUAGCAAAAGCCAUGGGUGACCGGCGAAUAGAGUUGCCUAAGCCUUCUAGAUAGAAGGGCUUAGUGUUUUAUUGCCGAGCUACACCCCUCUUCGCCACGGUUGCGACAACGACAAAGACGGUGGUAAGGCGGCUGCAACAACGAGAGAAGCCCCCCUCUCUCUAUGCCGGCACCAAGGAGGCUACAUUUGACCGACACAAGCCAGACGUCACUAGACCCUAGGGCAAAGCUGUCAGAGUAGGGAGAUGAGGAGGCUCGAUAGCCGAUGAGGAGGCCUCCAUUGGUGAUAGGGGGUCGAACUCGCCGCCACCAAGUAUGCUAGGAAGGCAAGAUUGAAGGAGGCCAUGCAUGAGCUGGGAUCACGAGGGCGGACUGAAUGGACGAGGUAGUGGGUCAAACGUACACUAACAUGAAUAUUGUAUUCAGUGGUAGAGCCAGAAAUUAUACAAGACUAGGACUUACUAUAGAUAUAACUCAACUAAUGGAGUGUUAGUUUUCUAAAAAAAAUACAUGGUGAAAUAAGAAAUUUUAAGCAAGUUUUUGGAGGCAGGCCUAGGG

Sequence
(OSA-LNCN0153.2):

CAAGGGCGGAACUGCCCAUUGGGCAGCAUGGGGGCGGUCGGCCAGCUACGGCCCGCGUCGCCCCAACCCCCCACACCCCCUUGGGCCAUAUCUAUUCACAAAUUGCCAAAUUGGCCCAUAAGUAGAAAGCCCAUCAGUGUCCAAUUCACCUUCUGUCUCGCUACCCCACGCGCGACGUUUAGUUUCUCCACGCAUCGCCCGCUCGCCGAGAGAGACAGAAGCCGAGACGUCGACUUACUCCGUCUCCGCGCCAGGCGCCACGCGCAGCGACACCUGCAGGCCGCCACCGCCGGCCGCCGCACACGGCGCGCACCGCAGAGGACGAGACGACGACGCCUAGCUGCCGCCGCCCGCCGUCCGGCGCCCUAGCGAGCAGCGAUGGCCGAUGGCCGACGGCCGGCCGCCCGGCCCGAUGCCGCUCGCAGCCGGCCAGGCCACCGCCCGCCAGCGCCAAGGUCCACCAGCGCCAAGGCCUCCUCUAGUCCUCCUGACCUCCCCGCGAGUCACGACCUGCCGUCUGCUGACCUCGCCUCCUGCUCGGGCAGCUCGACGCCAGCCGCUGGCGCUAGCGAAUCAGGCAAGCAAUGUCUCAGGCUCUCACUCCUCUCAGUGAAUCAACAAACAAAUCACUAAAUCAAUGUCUCACUCUCACUGUCUCAGCCGGUAGGGGGAGCACAGAGUAGCAAAAGCCAUGGGUGACCGGCGAAUAGAGUUGCCUAAGCCUUCUAGAUAGAAGGGCUUAGUGUUUUAUUGCCGAGCUACACCCCUCUUCGCCACGGUUGCGACAACGACAAAGACGGUGGUAAGGCGGCUGCAACAACGAGAGAAGCCCCCCUCUCUCUAUGCCGGCACCAAGGAGGCUACAUUUGACCGACACAAGCCAGACGUCACUAGACCCUAGGGCAAAGCUGUCAGAGUAGGGAGAUGAGGAGGCUCGAUAGCCGAUGAGGAGGCCUCCAUUGGUGAUAGGGGGUCGAACUCGCCGCCACCAAGUAUGCUAGGAAGGCAAGAUUGAAGGAGGCCAUGCAUGAGCUGGGAUCACGAGGGCGGACUGAAUGGACGAGGUAGUGGGUCAAACGUACACUAACAUGAAUAUUGUAUUCAGUGGUAGAGCCAGAAAUUAUACAAGACUAGGACUUACUAUAGAUAUAACUCAACUAAUGGAGUGUUAGUUUUCUAAAAAAAAUACAUGGUGAAAUAAGAAAUUUUAAGCAAGUUUUUGGAGGCAGGCCUAGGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

462

LEP:

93.9%

ME_num:

19

MEP:

3.86%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

1.75

Tip: OSA-LNCN0153 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day4.556862046946930.0290203962169279
2Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day5.411977331240340.00293611653136506