Chr:
Chr1
Start:
6645569
End:
6646416
Strand:
+
Ref_name:
OSA-LNCN0150
Sequence
(OSA-LNCN0150.1):
ACUACAGAUACAGAAGAUACAGAAGUCUCUAGCACAGAAGAAAAUGGUAGCUAACAUUUUGCAACGGACAAACAGAGCGAUCCGAUGGCCAAACAAUCCACUGAAAUCUAAGCAGAGAAUCUAGCAGACAACUUUUUUGAUCUCCAUUGUUCUUCCAAGCGGGUUGGUGUCAGGAUGGGGAAGAGAGCUGACAAGGGCAAUUUUAUCAUUAUUUAAUGCUCCCUCGUCCCAAAGUGCUUAGUUUUCCAUAUCCAAAGUUAAAUUAUCCGUCUUAUUUAUUUUUUUUACGAUAUUAAAUGAUAAAACAUAAAUAUUACUUUAUAGGUGACUUAUUUUUUAAAAUAUUUUCGUAAAUAUUUUAAAUAAGACAGACGAUUAUACGUUGGACACGGAAACCUGCAGCUACACUUAGAGUAUCCACGAUGUAAUGCAAAAGUAGUCUAUAAGCAAUAUAAUAUUUCAUUCAGCCACCUAGCAAUAUUGUUGAAGUAGUCCACAGCAAAGAAAUAACAAGAACUACCCAUAAGCAUAUGGGUUGCUCAUAGAGAAUAAAAUAU
Sequence
(OSA-LNCN0150.2):
AAUUGACUAAUAAAUUAACAUCAAAUGAUACAGAAUAAAUUUUAAACAAAUGUACAGGUCACGCUUCAAUGGAAUAGCUUAUAUGGAAAAAUGAAGCAUAAGGCUUGCGCUCUUCAAAGCAACAGUACACAGAAUCAAUUCAAAAACCAAGCGGGCGAGUACAAGUGCACAAAACUCUCCCAGACAAGCAUCAUAAGACUCGUAGCUAACAUUUUGCAACGGACAAACAGAGCGAUCCGAUGGCCAAACAAUCCACUGAAAUCUAAGCAGAGAAUCUAGCAGACAACUUUUUUGAUCUCCAUUGUUCUUCCAAGCGGGUUGGUGUCAGGAUGGGGAAGAGAGCUGACAAGGGCAAUUUUAUCAUUAUUUAAUGCUCCCUCGUCCCAAAGUGCUUAGUUUUCCAUAUCCAAAGUUAAAUUAUCCGUCUUAUUUAUUUUUUUUACGAUAUUAAAUGAUAAAACAUAAAUAUUACUUUAUAGGUGACUUAUUUUUUAAAAUAUUUUCGUAAAUAUUUUAAAUAAGACAGACGAUUAUACGUUGGACACGGAAACCUGCAGCUACACUUAGAGUAUCCACGAUGUAAUGCAAAAGUAGUCUAUAAGCAAUAUAAUAUUUCAUUCAGCCACCUAGCAAUAUUGUUGAAGUAGUCCACAGCAAAGAAAUAACAAGAACUACCCAUAAGCAUAUGGGUUGCUCAUAGAGAAUAAAAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
40.45%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.75
Avg Expression:
3.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.82871867899989 | 0.0435956856972384 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.39984067513531 | 0.000208024488432433 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.51854227005341 | 0.000283616561971481 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.07469562317681 | 0.0210625218697064 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.40246054284006 | 0.00771812251351066 |
| 6 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.45196925809826 | 0.00743249164156411 |