Chr:
Chr1
Start:
6578409
End:
6582152
Strand:
-
Ref_name:
OSA-LNCN0146
Sequence
(OSA-LNCN0146.1):
CCUCGCGCCACGUACGCCGACGCCGCCGCCGCCGCCGCGAGACCGGCGCGGAAUCGCGGCGAAAACCAGCAAAAACCACGCACGCCACGCGCAGAGAACCAAGCUGUUGCUGCACACUUGCGCGACUUGCCGGGGGCCUGGCACUGGCGCAGGUCGUCCGUUCCGUUUCGGCGUCGCUCUCGAUCGGACGGAUCCCAUCUGCUCUGCUCUGGCACGUACGGGGGGACGAGGUGGUCCACGAUCUCCUCCUCUUCCUCUCGCGUCUCUCUCAACGGCCACGGGAAUCUCUCUCUCUCUCUCUCUCUCCCUCUCCGCCGGACGCCAUGCCAAGACGUAACGUUGCGCCCACGAGUAGUACCACUACUGUAAAUGUAUACAGCAAGCAAAGCUAUAGCUACCCAGAAAAGCAAACCAAUCAAUCAAGGAAACGGACAGGAUAUACGGUGGCGAAACCCGGAACAAAAAUUACCGAGGUUUAACGUUACGCGAACCGCGGCGCGCGGGGGCCGUGUGGGCGGGCGUGCGUACGAGCUAAACUCCCCACACGCAGCGCCCGUCCAUCCACCACACCACGUACGUACGUCCCCUUGCCCGCUUCGGUGCGUGCGUGCGUGCACGGAUGGAUGGUGGCACCGCGCGCGCAUGUGAUGUCUCGUCGUGAUUUCGCUGACUUUUUUUGGACGGGUUCGAUCGCGUGACGUCGCCGUGGGCGCGCGAGGAGGGAAGGACAACAAGAGCUUGCAGUUGGUGACCUUGCAGAGCUAUUUUGGAACACACGGAUUUUACACGAUUUUUAGCCGAUAAAAGAGAUUGCAUUAAGAUGGUACAUGCCAAGGAGGGAAGGAGGACAAGAGCUUGCAGUUGGUGACCUUGCAGGACGGUCCUUAACCACACCUCCUCUCAUAACCUAUUACAUAGGUGAAUGCCUUUUUGUGGCAUGAACCAAUCUAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.07%
ME_num:
MEP:
7.11%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.64968199791144 | 0.00289133121255514 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.22112264081031 | 0.0395379397427126 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.39276582387161 | 0.000943786580175337 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.23053233075594 | 5.87996940974088e-05 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.7463506597188 | 0.00824164686254926 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.84014384327934 | 0.0408513086185583 |