Chr:
Chr1
Start:
5911345
End:
5912543
Strand:
-
Ref_name:
OSA-LNCN0133
Sequence
(OSA-LNCN0133.1):
GUAGUCAGCAAAAAUUUUGUCGUCGGCUUACACACUCUCCUGGUUUUUUUUCAUCCAAUUCAUCAGUUUCGUCAGGUUGGUUACGCUAUGGCUGAUUUCAAUUUCUUAGGGCAUUAGCAAUGCGCUAUUGAAAUAUGCCAAACCUCACCAGCCACAUAGACCAAGAACAAUAUAAGCUAAAUAUCUCACAAUGCAUGCCACUUACAAUGGGUCCCACUAAUAUCAACUUUACUUUUCAUCUCCUCUCUUUUUCUUUCCCCAACAACCCCACCAACAGAGAAGCCAAGACGCUCCUCUUUUUUUUUCCCACCACAUGAGCGGAGCUACAUUGGCGUCGAGCUGCACGAUGGAUGACAGUGGCGGUGCCGAGCGGCGGAUCUCUCCGUCACAACUCCGGACCACCACGAGCCCCUCUCCGUCGCCUCCCUCUCCCUCUCUUGAAGACGGCUGGGUGUCGAAGCCGCGGAUGACGGCAGCGCGGGAGGCUCCUCUCCCUCUUAAUCGUCUCACUCUUCUGCUCCGGAUCAACCUCGAGCUGCUCUCCCUCGACCACCUCUCGGUAGCAGCGGCAUGGAGCCACGGACGACGGUGGCGCCGAGCGACGGAUCUCGGGAGGCUCCUCUCCCUCUCCGUCACCUCCCUCGCCGGCUCCAGAUCAACCUCGAGCUGCUCUUUCUCUCCCCCUUCUUGGUAGCGGCAGCGCACUGAGCGUCAUGGCAGUGACGCGGAGCCACGAAUGACGGCAGCGACGCUUCUCCCCUCUCUCCCCCUUCUUCACCUCUUUUCUUGUGGGCCCAAACAUGCGAUUCCGACAACGAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.31%
ME_num:
MEP:
74.19%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.88
Avg Expression:
13.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.94891752773059 | 0.0360368726437265 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.43326784874783 | 0.000288551229849334 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.10357134588303 | 0.0450510083650375 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.93309410865642 | 0.0267336792382651 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.596856352139 | 0.0214018422016971 |