Chr:
Chr1
Start:
5904738
End:
5905912
Strand:
-
Ref_name:
OSA-LNCN0132
Sequence
(OSA-LNCN0132.1):
UGCUCCAUAAAUCUGCCAUGCAUCUGAAGACCUCAUAUAAUCAUUUGGACACCCCAGCCUCAUCAAAUCACCACAAUUUGCAAAACCCCAAAUCAGACAAACUACAGAAGCAGACAAUGCAAAGCCCCAACACACAGACUCAUCAUUGGUGCCAAAUCUAAAACAAAACGCUUCAUGUCAUAAACCUCCGAAUUGUAACUCAGUGCAUACUCACGCGACCUAAAACCCUUCAAUCAAGCACCUCCACUAACCUACACGGCUACACCAUUGCUCCCAAGCCGAAGUCCUUCAAAUGCUCACCCGCCACUACGCAUUCCCAGGUAUAUUGUGGACUGUUUUGCCCCUAGGCCCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
5.08%
ME_num:
MEP:
47.97%
HE_num:
HEP:
46.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.62
Avg Expression:
10.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.19596060324341 | 0.0225000519039974 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.25854971736634 | 0.0019586220285189 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.20925901185392 | 0.00249238654757289 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.38511061325885 | 5.71585383331824e-07 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.19823198819159 | 5.19110410079716e-06 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.51610260785958 | 2.78081237427879e-30 |