RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0119

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

5506897

End:

5509859

Strand:

+

Ref_name:

OSA-LNCN0119

Sequence
(OSA-LNCN0119.1):

UGGGCGUGGGCUGAUUGCAUCUGUUUGCGGGUGAGAGGCGACGCCGGGACAGGGGUGAAUCAAGGCCACGGCGACCUGUGCAGCGUGGUGUUGCCGAGCUGCUCUCUAGUUAGCAUUUAGCAAAGAUCGGUAAGGCCGAGAAGUCAAGAACUUGAGCUAUGCUUGCAAAACUUGAUAAAUGAAUCAUAUUACUGCGCUUGAUGACUUCUGGAAGUGCUAUUACGUACCAUUUCAAUUGGAUACAACUACUGCAGAAGGCUAUAUUUGUGUUUUAUUUUGACUUUUGAGAGAGCAAAGCCACAAUCUAUUAAGUGUUCGUCAAUUUUCAACUCUGGAUGUACUCUCCCUCUGCGUGUGUGUGUUUUUUUCUUUUGUUUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

152

LEP:

30.89%

ME_num:

255

MEP:

51.83%

HE_num:

84

HEP:

17.07%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flower

Tau :

0.81

Avg Expression:

11.51

Tip: OSA-LNCN0119 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"6.280296266363610.00979422443365606
2Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"5.735342051794890.030533333609126