RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0115

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

5172088

End:

5172843

Strand:

-

Ref_name:

OSA-LNCN0115

Sequence
(OSA-LNCN0115.2):

AAAAUGAAAACGAAAAAAAAAUCGCAGAGCAAGCGCCGCGCCUCCUCGUCCUCUCGCGCGCACAGCCUUAUCCUCUCAUCUCUCCUCGUCUCCCUUCUUAUCUUCUCCAAUCUCCUCCCUUCUCAACUCCUCCUCUUCCCCCUUCCUCCCCUUCACCUCUCCUCCCCCUCCCUUGCGGGCGCGGCGCGCGGCGGACGGUGGAUGCGGCCGCGGCGGCGCAGGCGGUGGCGUGCGACAGAAGCGGCCGCGGCAGCGGCCAGGCGGUGGUUGGGAUGCGGCCUGGCGGAGGACAGCAGCCGGGUAGCGGAAGAGGCCGCGACGGCGGCCGGGCGGCAGCUAGGCGGCGGCCCGGUGGAGGGCGGCGGCCAGGCGACGGCGGCAGUGGAGGAUUUGUUUAUUUUUUGGAUUUGUAAUGAAUUUGCUUUUGAGAAUUUGUGAUGUAUUUGAUCUGUGUGCGAUGUAAAUAUGUGAUGUAUUUAUGAUGUUUGUAUUUGAAGAUGGUGGAUUUGUAAUUGAUCGAUUUGAGAUUUAGAGAUGAUGUUCUGUUAUGUGAUUCUGGGGGAUGUGGUGAAAUCAAUAUUCAAAGUAGAAAACAAUACAAGAAAAGAGAAACUACCAAUCAGAUCUGAC

Sequence
(OSA-LNCN0115.1):

AAAAUGAAAACGAAAAAAAAAUCGCAGAGCAAGCGCCGCGCCUCCUCGUCCUCUCGCGCGCACAGCCUUAUCCUCUCAUCUCUCCUCGUCUCCCUUCUUAUCUUCUCCAAUCUCCUCCCUUCUCAACUCCUCCUCUUCCCCCUUCCUCCCCUUCACCUCUCCUCCCCCUCCCUUGCGGGCGCGGCGCGCGGCGGACGGUGGAUGCGGCCGCGGCGGCGCAGGCGGUGGCGUGCGACAGAAGCGGCCGCGGCAGCGGCCAGGCGGUGGUUGGGAUGCGGCCUGGCGGAGGACAGCAGCCGGGUAGCGGAAGAGGCCGCGACGGCGGCCGGGCGGCAGCUAGGCGGCGGCCCGGUGGAGGGCGGCGGCCAGGCGGUGGCUGGGCUGUGGCCGCGGCGGCGCAGGCAGCGGCGUGCGGAAGAAGCAGCCGUGGCGGCGGCUAGGCUGCGGCCUGGUGGAGGGCGGCGGGCAGGCGACGGCGGCAGUGGAGGAUUUGUUUAUUUUUUGGAUUUGUAAUGAAUUUGCUUUUGAGAAUUUGUGAUGUAUUUGAUCUGUGUGCGAUGUAAAUAUGUGAUGUAUUUAUGAUGUUUGUAUUUGAAGAUGGUGGAUUUGUAAUUGAUCGAUUUGAGAUUUAGAGAUGAUGUUCUGUUAUGUGAUUCUGGGGGAUGUGGUGAAAUCAAUAUUCAAAGUAGAAAACAAUACAAGAAAAGAGAAACUACCAAUCAGAUCUGACUUCAUCUUUAGUCCCGGUUGGUAAAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

453

LEP:

92.07%

ME_num:

16

MEP:

3.25%

HE_num:

22

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root

Tau :

0.98

Avg Expression:

8.93

Tip: OSA-LNCN0115 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated6.239998100409690.00621568149020241
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day5.603218830436420.0191809668941841