Chr:
Chr1
Start:
4966843
End:
4968105
Strand:
.
Ref_name:
OSA-LNCN0112
Sequence
(OSA-LNCN0112.1):
CGUGGCAUCACUUUGCAAUAAUUUGGGCUCCCUGUUUAGAUAGAUAGAUAGUAUACUGUAGUGCUACGCAAACUAGCGAAAAUUGAUCACGAAAGAGACACGAAUGGUUGCCCUAUACGUUUCUUCUAUUGGAGCACAUACUUGAGCUUCAGUUAUGUCAACCAUUUUCAAGGUUGCGUUCUAUCCAUCUCAUCUGAAUUAACUUUAGGGUCAACCUAAUUUUUUUUUGGGUUAUCUGUACCAACAUAUGAUGAACAAAAAAAGGGAGAAAGAUAACACAAGUUGGGGUUCACCAAAGUCAAAACCUGACUCCAAUUGUAGACGCAACUAACACAUGAUUUCCCUGAACAACAAGUACAGAGAGGAUAAACAAGAAGCAUAUAUAUGAACUUGUAGGCAUCUUUUUUUUUUCUCCUUUUUUCGGCAGAAGAUUGAGAUUGCUUCACGAACAAAAGAAAGGGCACAAUCAUCGUACACACAGGACAAUGUGAAUUGUAGCUUAGGUCUCUGAGAACACACGUCUCGCAUAGUUUCUUCAACGAAAACGUCGAAAUUAAUGGGCCAGUAUUCCUUGCUGCUGCUGAUGGCACAGCUUCAGAACAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAUAAGAAGAAAUGGAUCUCAUCGUCUCGCCGCCUCUGAUGGCUCCAUCACGGCACAAGACUUUGCUCGCCCAGAAUUAGGUUUCCGAUCACAUCUCCAGUCGAGACCAUCCAUGCAUCCAUCAUCAUCAAUUCAUCAUACAGCAGCAGCAGCAGCGAAGUCUUGCAGACCAUACAUACGAUAUCCAUGGCCAGAGAAAGCGAUGUAUCAAGAGCUAAGUAGCCCUAAUUAUUCGAUCUCUUGGUAGUACUUUUUACCAGCAAUUCAGAUUCAGCCAUCGUUUUGUAUGUGAUAAGUGUGCACGUUACGAGAGGAUCGAUGUAUCUGAAUAAUUGGACCAGAUAUAAUCUUUGUCCAUUUAAUUUGGUUUCAGUCGUACAUCGUCUGGUACGUGUGUGCCACGUGUGCAGGGGAGAUUGAAGGCGACAAAUGGGGAACUGACAGGUGCCAUGCAUCAUGGCCUCGACCCUUCGCCUUCGGUGGCCGGCUUGAUUGAUUUCAUGUCGUUGCAUACGUACGUGUUUGGCCGGUGUUCGUCCACUUCACCCGUCGUUGAUUUGCAGCUGAUUUUACGGCGGUGAAGGCUGAGCGUACGUGUUGGUCCAAAAAGUGUCAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
19.51%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.88
Avg Expression:
1.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.79603388203723 | 0.0237845236056845 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.05144928189425 | 0.00301636917737409 |
| 3 | 9311 // leaf // control--/--9311 // leaf // salt | 3.82946716460126 | 0.00134897667920816 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.1542107830161 | 0.00897738909727445 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.1541181603837 | 0.00906186453842187 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.15401161560106 | 0.00900133956811141 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.0645207158594 | 0.00226893824763216 |
| 8 | 9L136 // leaf // control--/--9L136 // leaf // salt | 6.30580502046513 | 1.99260091393253e-05 |
| 9 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 6.93954900487409 | 9.05182986199969e-07 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.23539400399629 | 0.00862836314387331 |