Chr:
Chr1
Start:
4066249
End:
4067429
Strand:
-
Ref_name:
OSA-LNCN0100
Sequence
(OSA-LNCN0100.1):
CUACUAGGGAAGGUCGCAGUUUGACGUGUUUCCAAGUGAUAUGUUUUCAGUUCAGACCUGAGCUGAGUUUCCUUAUAAAAGGAAGCCUCAAGCUGGGCAUCAUGUGACCCAUGCUCUGUUAGUGCCUUCUGUCUAUCUAUCCCCCUUGCUGGUUUCUUCCUCCUCUUCUGCGUCGUCGACUUCGUCUCCGGCGGCCGCGGCACGGGCGGCGAUGUACAACCCUCCGGCGGCGCAGGAGAUGUCCUACUCCGACCAUGUCAAGAAGCGCCAUGAGGACAAAGGCUGCCUCUAUGCAUGCCUGUUCACCCUCUGCUGCUGCUUCUGCUGCUACGAGACCUGCGAGUGCUGCCUCGAAUGCCUCUGCUGCUGCUGAUCUCCUUAUCUCAUUUCAGCAGUCAAAAUAAUGAUGAUGAUAUAUCAUAUAUAGUCAGGAAUAAAAGAUAUAAUAUGCCGUUUGAAAUGCAGGAAUUUAUUUUUCCGAUUUCAAACCAUAGUUUGUUGUUGUAUGUGUACUGGUGACAAUAUCAUGGUAGAUGAAACUUUCUGAAAAUUUGGUAGGUAUCAGCAAGAUUUGAUCUUUUUAGUUGUGCUCCCAUCUAUAAAAUGAAUAAAUAUAUUUAAGCUGCCUGCCGAGAUAAAAUUAUUAAUCAGACCGUAACAAGCAUCCAACUAAUAUAACAAUGGGAUAACGUAUAUUGUACAAAUGGGAUGUUCAUGACAAAGCGCACACAUUUCUGAUACAAAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
7.11%
ME_num:
MEP:
39.63%
HE_num:
HEP:
53.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.81
Avg Expression:
27.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.40526554872619 | 0.0360777235034849 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.74137359306603 | 5.20337683561628e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.50213938756698 | 1.39126493635134e-11 |
| 4 | IR64NIL // root // control--/--IR64NIL // root // Al | 1.01753433957742 | 1.78103589659716e-08 |
| 5 | Azucena // root // control--/--Azucena // root // Al | 1.60021651352881 | 3.14792432634147e-19 |
| 6 | AzuNIL // root // control--/--AzuNIL // root // Al | 1.94274115911078 | 2.52058719787874e-15 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.09587624810584 | 0.000323311217505268 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.05651578011967 | 0.00707111928036201 |
| 9 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 2.32188010796526 | 0.000264042873502178 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.75691395007587 | 0.0064958090744937 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.19592252661844 | 2.95886010333845e-24 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.42146547020879 | 7.53816950105981e-24 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.47060187218347 | 4.12467749254164e-10 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.07817337082902 | 1.06335508389518e-12 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.44789817417302 | 3.28220641876799e-06 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.19008607818729 | 0.000447016203822785 |