Chr:
Chr1
Start:
3122899
End:
3124279
Strand:
+
Ref_name:
OSA-LNCN0081
Sequence
(OSA-LNCN0081.1):
AAACAAAUAAACAAACCACUUCAAAUUGGUCGGAGAAGAAGAGGGCGUUCGCGCAUGGGGAAGGCGGCGAGCAUGAGGGUGGCGCUGGUGUCCGUGGUGCUCGUGGGCCUGAUCCUGGUUUCCACGGCCCACGCCGCGCGGCCCGAGAAGCUGCCCGCCGUCGUCUCCCCCUCCAUCGCCCCCGCCGUCGCCGAGGUCGUCGAUGCCGCCAUCAACGCCGUCGACCUCCUGGCAGGGUUUCAAAAACCGCCGGGGGCCCGGUUACCGCCACCCGGCGGUACGGCGGUUACCGGCGGUAACCGCGGUAACCGCGCAAAACCGCGACAAAUUUACAAAUCGAAAUUUGAAUUCAAAAAUUCGGGCAAACCGCGCGGUUUGACGCGGUAACCACGCGGUUUGGCGCGGUUACCGCGCGAUGUGUAAUGGGUUGCACAGUAACGGGCCGGCCCAUUUUUUUUUCUUUUUCCAAUUUUCAAAUUUAUUCUCCGUUUUGCUCUCAAAUUUGAAUAAAUAUUACUCUUUUUUGAGAAAUUUCUUCACCAUAAAACACUAUAAAUCAAGCACUACCUUCACUAUUUUUUUUGAUUUUUUUUUUUUAAAUUUUUGAAUUUGGACGAAUUUUAUUAAACCGUACCGCGCAAGCACUACCUUCACUAUUUUUUUUGAUUUUUUUCUUUUUUUUAAAAUUUUUAAAUUUGGACGAAUUUUAUUAAACCGUACCGCGCGGUACGGGUAACCGUACCCCCGCGGUACGGGCGGUAACCGCGCCGCGCGGUUACCGGCGGUUUUUCACACCCUGCCUCCUGGGGGUCUCGAAGAUGCAGGAGGCCAACCCGUACACUCGCGGCUGCAGCAGGAUCAACCGGUGCCGCGGCUGACGGACGGCACGCGCGCGUCGCAAUUAUACAUGUGUAUUUGAGUAUUGAUCAUCGACGACGACGAUGAGCUAGCUGGUGGACGAUUGAUUUCGCGUGGUGGCGAUUGGAUCUAAUUACCCGUAGAAGAAAGUGACAAACGGACGUAGUUCUAUGAUUCGACUCGGGGGAUCGGAACGAAAACAAGUACUGUAACCACCCGUACUCCCUCCGUUCCGUUCCAAAUUAUACAUUGUUUUGUUUUGGGUUUGUCGAAGUCAAAACUUAAAUUACUUAAUUGUUAAUUUUGAUUAAAUUUAUAUUGUUGUAUAAAAUAUAGGUAGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.35%
ME_num:
MEP:
6.71%
HE_num:
HEP:
8.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.98
Avg Expression:
700.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.57199469973493 | 4.4774156870087e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.66556558702734 | 2.22003383354078e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.81761666650529 | 1.16560469277847e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.84280915662326 | 0.000139361435226157 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -6.07860377963508 | 2.95480709120346e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.24435535311719 | 1.70854360181812e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.9577906145725 | 1.98243737698557e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.73157836571539 | 0.029866115120935 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.62866995468439 | 1.85609668533288e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.10233766233154 | 3.2226081488938e-07 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.52938393866415 | 5.22261849153979e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.23311118108909 | 1.20235765803046e-07 |