Chr:
Chr1
Start:
3094479
End:
3095072
Strand:
.
Ref_name:
OSA-LNCN0078
Sequence
(OSA-LNCN0078.1):
AGCUGAGGCGCGCGGUUCCUUCUCUCGCAAACCCACGCGCGGCAAGAAACCGAGGCGCGGGGCAGAGGAGUGACGCAGAGGUACGCGCGCUGUGGGCAACGUUUCUUCGCUGCCCUGUGCCCUCGCGCCGAUUCCCCCAGAAGAAAUCCCCGAUUCGCCCUCGAGAAGUGUCGUGGUGGAGAAGACCAGGAAGAAGAGAAGGCUAGAGAAGUGGAAGCCGAGCAAGAAAUUGAAGUCAUCACAGAUCGGAUUCAACAAGAUGAAAAAGAAAAAGGAAGAAAAAUCAUCACAAAUAAAAAAAAUCAUCCCGCUCCCCACCAUGGCCGCCGUCAUGGCGCUCUGCGCCGCCUCCUAACUCCUCGGCCGUGCCCUCCUGACCACCGCCGGCUCCUCCAUGGCUUGCUCCUGCUCCUCCUCCUCCUACUUCCCUGCAACAAAGAGGAAUCAAAUCACACAAAAACAGCUCCUUCCUUUGGCCUUUGAUUUCUCCUCACCUCCAUGAGCCUCUUGAGGGGGCGAGGAGGCGCGGCUGGCUCCGGAGUCUCCGGGCGAUUCAUCUCCUGACGACCGCCAACGAAUCCAGGGGCCCGCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.9%
ME_num:
MEP:
4.27%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.78257213674797 | 0.00296591388351749 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 5.2487421348223 | 0.00106506373371661 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 6.77879288203503 | 7.06479468982976e-07 |