RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0077

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

3067281

End:

3079484

Strand:

+

Ref_name:

OSA-LNCN0077

Sequence
(OSA-LNCN0077.1):

CUUCCUUCUGCGUCUUGGGUCUGGGCGAGGCGAGCUCUUCACUUCUUCUCCAUCGCCUACAGCGACAGUGCUCUCCUUCUCCUCCCCUCGCUCCGCCUCCGCCGGCAUCGCCCUCUACUCCGCCCCCACCGUCCCCGGCGCCGCUGAGCUCCCGCCUGCCGCCAUCUCCACUGCGCCCUGUUCCACCCCGCGUCUCCAGCCUCGUUUUUGCGCCAUCGCCGCCGAGACCCCCUUGGCCUCCAAGUGCAUGGCUGCCGCCGUCUCAGCCUCGAUCUGGUUGGCAAGGUCGCCGUCGUCUACUCAUCUUCACGGCGCACUGGAGUAAUGGCACUGGCUACCGGAGCACGCGGCAACCAGACGCUGGGAGCUGGACGAGCUCAGGACAAUCCUAUGCAAACAGGGCAAAUCCAAAGCCGAAUCCCAAUCCAGCAAAAAGGAA

Sequence
(OSA-LNCN0077.2):

UUCUCCAUCGCCUACAGCGACAGUGCUCUCCUUCUCCUCCCCUCGCUCCGCCUCCGCCGGCAUCGCCCUCUACUCCGCCCCCACCGUCCCCGGCGCCGCUGAGCUCCCGCCUGCCGCCAUCUCCACUGCGCCCUGUUCCACCCCGCGUCUCCAGCCUCGUUUUUGCGCCAUCGCCGCCGAGACCCCCUUGGCCUCCAAGUGCAUGGCUGCCGCCGUCUCAGCCUCGAUCUGGUUGGCAAGGUCGCCGUCGUCUACUCAUCUUCACGGCGCACUGGAGUAAUGGCACUGGCUACCGGAGCACGCGGCAACCAGACGCUGGGAGCUGGACGAGCUCAGGACAAUCCUAUGCAAACAGGAGAAUUUCACCGUCAACUGCUUCUUGUGCUUUGGCCUCGGCAAUAUUUUCUACCUGCGUAUCACCGGA

Sequence
(OSA-LNCN0077.3):

CCCGGCGCCGCUGAGCUCCCGCCUGCCGCCAUCUCCACUGCGCCCUGUUCCACCCCGCGUCUCCAGCCUCGUUUUUGCGCCAUCGCCGCCGAGACCCCCUUGGCCUCCAAGUGCAUGGCUGCCGCCGUCUCAGCCUCGAUCUGGUUGGCAAGGUCGCCGUCGUCUACUCAUCUUCACGGCGCACUGGAGUAAUGGCACUGGCUACCGGAGCACGCGGCAACCAGACGCUGGGAGCUGGACGAGCUCAGGACAAUCCUAUGCAAACAGGUGACAACUAGUCAAAAGUCUCCUGAAUUUCAGUCCGACAGGGAGCUGCCGCGGGCCGGUGUCAUUCACAUCGAUAUCGUGCAACGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

193

LEP:

39.23%

ME_num:

280

MEP:

56.91%

HE_num:

18

HEP:

3.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.71

Avg Expression:

4.19

Tip: OSA-LNCN0077 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.552962448434670.024327961985074