Chr:
Chr1
Start:
2702302
End:
2702904
Strand:
+
Ref_name:
OSA-LNCN0071
Sequence
(OSA-LNCN0071.1):
GGAGAAUAAUUUAUAAUAAAAAUCAUAAUCAAAGCAGAACACUGUUUUGGUAAGUUUUACAUAACAAGGAAUUAAGUAUCUACUGUACUACCACUAAGAGUCAAAUAGUAAAUUUCACACUGUUUUAGUAAUAUUGCUCAUGAGAAGGCCCCUGGGCCGGUCCGGGUUCGAGCCUCACUCCUCUUAAUAAUUUCUUAUAUGAGAGCCCCUCCUCUCAUAUCCAAUGGGUUUUUUAUGGUAAUAUUUCUCAUAAGUUACAUAAUUCGCCUAAAUAUCAAAUGGAAGAGAAGCGCUUGCUAGCGCAGUGGCAGAGGUAUGCGGAUUCAACCCCGAAGUCCCGUGUUCGACUCUAGUGCACGCUCGCAUUUCUUCUUAAUUAAUUGACACCAAGUUCCUCUUUAGUGUCCAGCGUUUCUCCUUGGUGUCUUGUGUGUGUUUUUUUUUCAAGCAAAAAACCUUUCCAACCACAUGAAUUUGCACAGUUGUAUUAUUCAACUACACUCUGUUGCACCAUAGUAUUCAAGGUCCUAUAGCAACUAGCAGGUAACAAAAAAAUGAAGCAGUAAACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.02%
ME_num:
MEP:
35.57%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.85
Avg Expression:
1.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.94287099459385 | 0.00106391218829358 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.20018319344246 | 0.00208001791977051 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.59464804144964 | 0.0150009515665961 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.10599707818409 | 0.00110777430854278 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.73810322899488 | 0.00427176272701443 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.20317390337193 | 0.0242220103411607 |