RiceNCexp:Browse

OSA-LNCN0068

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr1

Start:

2705699

End:

2706265

Strand:

Ref_name:

OSA-LNCN0068

Sequence
(OSA-LNCN0068.1):

GCUCAAAAGAUUUAAGUAUUUUUACUCUGAAGAUGAUGCAGCAUGCAGGUCUCAAAUUAGUCAUGAUAAAGUGAGACAAUUCUUCAUGGCAUUGCAGCGCAGCAAUCCUAGUGAUGACUAGAAGCAAUCAUGGGCGAUAGCAUUCUGGAGGCAGUAAUUAAGUAAAGAUUAAGCCAGUCACUUUCAUUAACAAUGAACAUGUGGUGGAAGAAAAGGCUGGUCUUGAUUUUGAUAUCUUGAUUAGCGAUGCGAUGUGUACUAGUAAUACUCUGUUGUUAUAACUACUGGCCUAGAAGGCUAGAACAAGUCAGCACAAGGUCUUUUUUUUAUUUUCUCUCUAUUUAUACGAUGGAGAAGUUCCAUACGUCAAAGAUAACUAGCAAAAGGAAUAAAAUGAUAUGAUUUCCACUGAAGAUGGCAUGCCAAGUUUGAUUGGAGCUGCAUGUACUACCCUGAGCAUUGAGCAGGUCAACAUAGACCAAGAGAAAAUUCAUAGAUAUCACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

481

LEP:

97.76%

ME_num:

MEP:

2.03%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.96

Avg Expression:

0.12

Tip: OSA-LNCN0068 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-4.35088825049553	0.0101160968290999
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-5.41318547412419	0.00107883654995861
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.11177460813425	0.0197281557522605
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-4.55777339819244	0.0167643633731631
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-4.71190287957919	0.00328923124729336
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-5.27881765525617	0.00243111244419355
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.41755957548834	0.0055007539224691
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-4.89252134446816	0.00198239612181528
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-5.26743202843639	0.00202630470233174
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-4.16290807177082	0.00279159980079938