Chr:
Chr1
Start:
2541819
End:
2542708
Strand:
.
Ref_name:
OSA-LNCN0060
Sequence
(OSA-LNCN0060.1):
GGCCGCUCUCUCCCUCUCCCUCUCUCUCCCGUGGAAGGUGGCGGCGGCGACCCCGGAGGCGGCAGAUCCGGCGCCGCCGUGGAUACCUGGUCAAAUUGCCCGGAUACCUUUGGUCUGACUAGUCACCCAGUGCCAACUGCACUGUUCACCGACCGAAAACACUAUUCAUUAUUUUCUCAACAAACAUUUACCUUUGACAAUUAUUCAUCACAUCGAUUAAAUCAUCACAUGAUUUCACAAAAUCAUGCUCUCUGGUCCCAAUUCCUGAUCAAACUAUCAGUCAUCAUUUUGUUUGUACAAGAAUUUCUUCCAGGCUUCUCGUCGGUCCCAGUGGCACCACUUUAUUGUUCCGAACCCCUAUCCCAUCCACUAAGAGCACCCGCAAUGGUAAAGUAAGUGGAAGACGUUGGUGCCGGGGAAGAUGGUGGAGCAAAUGGAAAACUGCAGAGGCUUGCUCGAUGCAAGAAUUCGUCUACUUCAAUCAGAGGACGGGAUUGGAUGAAGAGUGGGGUCUUGCUGCGGGGCUCACACAAGACGAACGAUUGGUUGCAAGCAGGAUAACCUAUCUGUGUGUGUGUGUGUGUGUUUUGCCUUCUUUGUAGUGUGUUUUCCUGUCUGUUGGCCUGCGGCCUGAGUCUCGGUGUGGGCUGUGAGCGGUCUUGGAAAAGCUGGAGAGUUACACCCCAGCAUUUUGUAUCGAACCAAAAACUCUUUACGCAUUCAGUAAAAAGCCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.14%
ME_num:
MEP:
27.44%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
2.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.47225242355354 | 0.000398344123542492 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.53369672092593 | 0.0481367676735347 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.88910503711499 | 0.0011585203535557 |
4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.38240623189293 | 0.00564825440854245 |