Chr:
Chr1
Start:
2212389
End:
2224678
Strand:
+
Ref_name:
OSA-LNCN0050
Sequence
(OSA-LNCN0050.1):
UGGCUUGUCAUCCUCUGCUUCAACUUUAAAGAGAGAGAGCUAAUAGUAGAUGAUGGUUCAAAGAAUGGAUUGGUGAUCCACUUGGGUUUCAGCUGGGUGAUCAUAUGCAACAUGGACUAGCUACUUGGCUUAGUUCAAAGGAUCUGCUUCUUGGAUGCUGUCCGGCCACGUCGCCAUGCAUGUCAAUUCUGUGGAUGGCGUCAAAGGCUGCAUGCAAGGAGCUGAUUUUAAUUAACAUGUUGCCACCCACCUAAUUAAGCAUUUGUGUGUUAAUUUAUUAUUACUUUGCUACUAUCUCUUUGUACUAUAGUACUCCUACUAUGUAAGUGCUAUAUCCUUGGGUUUUUUAUUCCAAGCUACUAGCAUGCAAGCCUUUGUCAGAGAGAAACCGAUGCAAUAUGCCUUGUUAGUUUCAAGAGUCCAUGCGUAAUAUGCAUGCUUUGUGGAUUCAGUAUUGGUCAAGGGCAAUGGAUCCAUUUGGAGUAUACUAUGUAAGAAUUGAGCAACAGUAUGUGCUAUUGUUCUAAAUAAAGAUCAUUGUGGCCUUCUGAAGGCAGUUUACAAGUGCCCGGGGCCACCGCGCUGCAGCGAUUGAGGAGGACAAAGGAGGACAGCAGGCGGCCGGUGCUUGUGUCAGGUCGAGUAAACCUAUACGCUUGUGGACUUGGCCGGGGAGCAUUGGGCUGCGCCAGCUGAUGGACGCAGUUUGUUACAGCGUCCACACCUGGAUGCUGUGACCAGUAGUGUCCUUACUAUUUUGCUAAAUAAUACCACUAAUUUACUGAUUAUUUAAUUUUAGGAUUAUAGAUUAUUAUAAAUAAAAAUUUUGGCUCUAUAUCUCUAUAGUUCCAUCAAGGGAUAAGCAUCCUGUGUAGGACAACUGAUGCUAGCAGCGAAAAAUGAAUGCACAAAAGUUAUUCAGAUCAGGAGUAAUAAUUGCUAGAGAAUGUUUAAACAUAUUUGAAAACAGAAAAAAUGUGCCAGGGCAUCAUGCCAUCAAAACAUACCAAUUCUUCUAUAAACAUAUGCAUUAGCUAUUAUAUGUCAAGGAAACCACAAGUGCUCCCAGUAAAAUAAGUAUUCCCUCCAUUUCUUUUAUUUGACGUUGGUUAGUUCAAAAACAUCAAAGAAAAACAAAUGAAGUAAAACAACAGCCGUUUUAGGUUACGCAUGGUAUCAUUACAACACAGGUGUUAGAUAUGUACUAAAAAUAAACAAAUCUAUACAAAGACAAAGAAAGAUGAAUCGAACUCGGUAUACAACAUGUGUAAAAUAAGUAUCUGCUUUAAGCUUUGGGAUGUUGAUGGCUUAAAAAUAGCUUAUUGCACACAUGAAAAGUGACCAAACCAAAAGUAGUUAUGUAAGAGCUGCUAUUAAUAGGACACACCUUGCAAGAAACAGCUUUCACAGUUUUCCAUAAAUGUUUUCUUUUUUGAGAAAAAAGCUCACUUGCCUGCAUCAAUUAUACAUUUUUUUUUAGGAUUUUGGCUGCCUAGAAACAUUCUUAUAGGCUCACCAAGAGUGUCACUGCAGCAAUGGGGCAACAACUGAAUCAGGACAUCACCUUAUCCAGAGAAAGGAGUCAAGGCACUACUGGUGUUCCAAGCUAUUUAAUUCUGAACAUUAUCCAUACAUUUAUACACAGAAUACAUGCAGCUUCAUAAAUAUUGACAAUAACAGCUGCAUAAUUUGAACUUUAAAAAAUAUAGAGAAAAAAUCAACAAGAGAAAUUGCAGCAUGAAAAAAUAAGACUAACUAGCUAUUGCCACUUAGAGAAGGAAUCUUGGCAGUUUUUUAAAGCCUUAAUGGUACCCCAAGACAUGAACUGCAAAACUACUACAGUAUCAACAGGAAGUAUCAAAAGCUCAAUAUAAUCUUUCCAAAGGAAAAUGCUGGAUGAAUUUUGAAUAGCUCAUAGGAAUACAUUAAACCCUUGAGUACACACAGAAGUGCAAAAUGGAAUCACAAAAACAUAAGUAUUUUGAUUGCUGUUCAAUACCACUGAAAAAAGAGAGCAAAGCAUGCUACAAAUUACAGUUUCAGAACAUACACAUGUAGUGAGGUAGCAGCGAAAGAGUUAGGGAUGUUGGGAGAAUGUUAGUUUAACACACAACUCAACUGAACAUCUACCAUGACACCAACGUAAAAGGCACCACGUCAUUGAGUUUUAGUAAUGGAAUUAGUAAGAGUGAGGAUUUAUUGUCAAGAUAUGUAGUUGAAAUAUAUAGGUAUAUAUAUGAGGGUAUAACUA
Sequence
(OSA-LNCN0050.2):
UGAUCAUAUGCAACAUGGACUAGCUACUUGGCUUAGUUCAAAGGAUCUGCUUCUUGGAUGCUGUCCGGCCACGUCGCCAUGCAUGUCAAUUCUGUGGAUGGCGUCAAAGGCUGCAUGCAAGGAGCUGAUUUUAAUUAACAUGUUGCCACCCACCUAAUUAAGCAUUUGUGUGUUAAUUUAUUAUUACUUUGCUACUAUCUCUUUGUACUAUAGUACUCCUACUAUGUAAGUGCUAUAUCCUUGGGUUUUUUAUUCCAAGCUACUAGCAUGCAAGCCUUUGUCAGAGAGAAACCGAUGCAAUAUGCCUUGUUAGUUUCAAGAGUCCAUGCGUAAUAUGCAUGCUUUGUGGAUUCAGUAUUGGUCAAGGGCAAUGGAUCCAUUUGGAGUAUACUAGCUGAAUCCGACGUGUCCCCGCCGUCAUAAGAAGCUCGCCGCCGCGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.89%
ME_num:
MEP:
47.15%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.88
Avg Expression:
8.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.46246029647695 | 4.18709710949672e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.72961656959543 | 2.44774578738656e-22 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.33390851415804 | 1.51722536876875e-14 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.40979310887787 | 0.000313481079097195 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.07233830583558 | 0.0385296559884979 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.36371718384283 | 1.71658610409922e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.94108925976242 | 1.19607506781378e-31 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.90120332033672 | 0.0376501067792397 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.90112051951787 | 0.0382027906358593 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.90096388857477 | 0.0377929887652983 |