Chr:
Chr1
Start:
2210124
End:
2213052
Strand:
-
Ref_name:
OSA-LNCN0049
Sequence
(OSA-LNCN0049.1):
GUCAUACUUGGGGUGCUGCGUACCUAGACUUUGAUGUGUUUUUCACGUCUUUGUCGCAACUAGGAAGUGUCGUGCUCGGUUGAUAAAACCAUGAAAAAAAUUGAUUGGUUGUUAGUAAUUUGGUGGUCUUCGACUUCUAUGCGUCCUAGCUACAUUAAACAAGAGGAUGAUUAAAUUUAAUUAAAUUUUGAACUAGCUAGUUUGAGUUUUUUCCCCCUCCGGCAGGUCUAAAAUCGUAUCAACACUUUUUGAACAUAAUAAAGAAUAUUUUUUAAUUUAUGUUGGAUGGGAAUGAUGUCUGAAUUUAUCUUGAAAAAAAUUCUAUAGUGUUCUAAUUUUGUUAGGUUUGUAAAUUAUUUUCUGACAGAAAUUACAGUGCAAUAAAAUGAUAUGCACUUUGAAAAUCAUAUCAAUCUGCACGCAAAAAAAAGAGAGAAGAAAAUUGUAUCAAUUUUCAGGACAAAUAUGUUUUCAUGACAAGGAAGCAUGAUUUCAUUUGUGACAGAAAGUUUUUAAUGGAAUGAACAUGGUUUCUGCCAGCCUUUUCAAGAGACUGAGGGAGGGAGAGAGAGAGAAAAAGGAGAAUAACAAGUUGCUCCUCAAUUAUAGGGUUGCAAUGAUAUAUAUUACCUUUAAACUAAAGGUCUCUUAGCCAUUGCCACAUAUGUAAUGUAAUUUAAAUUCAAAUGGAUAUUAAAGGCCAUUCCAAGUCACAUUCCGCGUUCUCGUGGUCAUACCGCGUGAACCUAGUGAUGGAGAAGAGAUCGAACCCGGUCAUACUUGGGCGCUAGCUUGAUGUAAGUCAUUGUCACAACUAGGCGAGUCGUGUUCUAUAACAAUGUAGAAUCGAAGUAAAUCAAUUCUUGAAUUGUCUCGCAAAAAAAAGGGGUGAUCUUGAGUUGAAUUUUAUCAAUUUUAGGCAAAAUUGGGUGAACAAGGAAAAUAGAAGAGAUCGAUAAAAAAGACUGAAAAUGGAGCCAAAAUUUUCUAAGCACCUUUUUUCACACUGGCAAGAACUUAUUAGAGAGACCAUGCAAGCAGCAAGCUGAAAAAGCUGCAGAUUCAAAUGUAGUAAUGGUUCAGGAUAAAUCUCCACUUAUUCAAAUGUAGUCUGUUUUCUUUCAUAUUGUUGAUCACAGUACAGUAUUAUAUAGCCAGCUAGAGGGAAAUCAACACAUCAAGUUGCUGUCUGUACACAUGCCAUCCCUACAAGAUCAAUGCAAAGACUUGAUUCGUUUUCCUGCUCAUACAACGCGCGUGAGCAUGUAUUGACCACUGACCAUUGCUUAGAAAGCUACUGACUGACUGAAUUGAAGCAUAUGCAUAUGGCUUUGUCGCACUGGA
Sequence
(OSA-LNCN0049.2):
UAACAAGUGUACAACUAAACAAAUAAUUUGGAGUCCAUGAAUGCAUGAACAGCUAAACACAUGUGCACACAAGAUCACAGCAUCAGCUAACCCCAGGAAAAGGUAGUUUGAUUCCAAGACGGAAAUCAAUUAACAACCGACUAAUCCUUGUCAAAGCAACGUUUAAUUACUUACUAGUAUACUCCAAAUGGAUCCAUUGCCCUUGACCAAUACUGAAUCCACAAAGCAUGCAUAUUACGCAUGGACUCUUGAAACUAACAAGGCAUAUUGCAUCGGUUUCUCUCUGACAAAGGCUUGCAUGCUAGUAGCUUGGAAUAAAAAACCCAAGGAUAUAGCACUUACAUAGUAGGAGUACUAUAGUACAAAGAGAUAGUAGCAAAGUAAUAAUAAAUUAACACACAAAUGCUUAAUUAGGUGGGUGGCAACAUGUUAAUUAAAAUCAGCUCCUUGCAUGCAGCCUUUGACGCCAUCCACAGAAUUGACAUGCAUGGCGACGUGGCCGGACAGCAUCCAAGAAGCAGAUCCUUUGAACUAAGCCAAGUAGCUAGUCCAUGUUGCAUAUGAUCACCCAGCUGAAACCCAAGUGGAUCACCAAUCCAUUCUUUGAACCAUCAUCUACUAUUAGCUCUCUCUCUUUAAAGUUGAAGCAGAGGAUGACAAGCCAGCAGCACAGCUAGUAGCAGCAACUUGCAAAAAAAAAAUUUCAGGCUAGCUAGCUCUACUAGCCUCUUCUUACACACACACACACAAGAGAGGAGGAGGAAGAAGGAUUGGAUUGGGUUGGCCUGGUUGGAUUGGAUGGCAAUGGAAACUUGAGCCGGUCACUGCAGCUGCUAGGAUCCAGUUGCCAACUUGGCACGCACACGGUAUGAAACUGUGUGCUGUACGUCUCAAACUGCCUCUCUAGUAGCCAAACAAGCUGUGUGGUUUUUCCACUGGAAAGCUACACUCCCCUUGCAACUUGCUGCUGCUAGCUGCUGUUGCUGCAUUCUUGCCUGCACCUUUUUUCACACUGGCAAGAACUUAUUAGAGAGACCAUGCAAGCAGCAAGCUGAAAAAGCUGCAGAUUCAAAUGUAGUAAUGGUUCAGGAUAAAUCUCC
Sequence
(OSA-LNCN0049.3):
UAACAAGUGUACAACUAAACAAAUAAUUUGGAGUCCAUGAAUGCAUGAACAGCUAAACACAUGUGCACACAAGAUCACAGCAUCAGCUAACCCCAGGAAAAGGUAGUUUGAUUCCAAGACGGAAAUCAAUUAACAACCGACUAAUCCUUGUCAAAGCAACGUUUAAUUACUUACUAGUAUACUCCAAAUGGAUCCAUUGCCCUUGACCAAUACUGAAUCCACAAAGCAUGCAUAUUACGCAUGGACUCUUGAAACUAACAAGGCAUAUUGCAUCGGUUUCUCUCUGACAAAGGCUUGCAUGCUAGUAGCUUGGAAUAAAAAACCCAAGGAUAUAGCACUUACAUAGUAGGAGUACUAUAGUACAAAGAGAUAGUAGCAAAGUAAUAAUAAAUUAACACACAAAUGCUUAAUUAGGUGGGUGGCAACAUGUUAAUUAAAAUCAGCUCCUUGCAUGCAGCCUUUGACGCCAUCCACAGAAUUGACAUGCAUGGCGACGUGGCCGGACAGCAUCCAAGAAGCAGAUCCUUUGAACUAAGCCAAGUAGCUAGUCCAUGUUGCAUAUGAUCACCCAGCUGAAACCCAAGUGGAUCACCAAUCCAUUCUUUGAACCAUCAUCUACUAUUAGCUCUCUCUCUUUAAAGUUGAAGCAGAGGAUGACAAGCCAGCAGCACAGCUAGUAGCAGCAACUUGCAAAAAAAAAAUUUCAGGCUAGCUAGCUCUACUAGCCUCUUCUUACACACACACACACAAGAGAGGAGGAGGAAGAAGGAUUGGAUUGGGUUGGCCUGGUUGGAUUGGAUGGCAAUGGAAACUUGAGCCGGUCACUGCAGCUGCUAGGAUCCAGUUGCCAACUUGGCACGCACACGGUAUGAAACUGUGUGCUGUACGUCUCAAACUGCCUCUCUAGUAGCCAAACAAGCUGUGUGGUUUUUCCACUGGAAAGCUACACUCCCCUUGCAACUUGCUGCUGCUAGCUGCUGUUGCUGCAUUCUUGCCUGGUGCGUAUAAAUAUUAUUUAUAUGUAUAUAUACAGGAGGGCUUUGGGAUCGUGCAGAUAUAUAUGUGCUGAGCCAUCGACGAGAAAAUCCGGUCGGCCGGUCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.32%
ME_num:
MEP:
16.87%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.96
Avg Expression:
3.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.21474490501404 | 0.0174634485515209 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.81248860620096 | 0.00277768105121161 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.21774318347771 | 0.0267626419460521 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -4.13022317140575 | 0.00806831519035709 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.75659451701088 | 0.0434353522359796 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.68186747826929 | 0.013263693252008 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.01507641650448 | 0.0283617339434725 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.68670796326849 | 0.0018574559398822 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 5.40430352444716 | 0.000309750681304762 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.75701291492998 | 0.0386281399158082 |
| 11 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.22197404050752 | 0.0037871287272886 |