RiceNCexp:Browse

OSA-LNCN0045

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr1

Start:

2111722

End:

2113116

Strand:

Ref_name:

OSA-LNCN0045

Sequence
(OSA-LNCN0045.1):

CCAACAGCCUCUCUAAAAUAGACUCUCCAAACACGCAUAUAGCCAACUCUCCAUCUGAUUUGGCUAGUCAGAGUCAUUGAUUGCUCCAACAGCCUCUCUAUCUACCCUCUCCAUUACAAGUCUAUGACAAAUUUGACCCAUAUGUCAGUCUCCUAUUAACCUUCUUCCUCCUCUUCCACCCCAUUUUCCUCACUCAUACAUCUCCCUUCCUUCUACUACUACUGCUGCCUCCUCCCGACACCCUUUCCUCCGAUGCGGCGACGGCGAGCGUGCGGGGUGACGGAGGGGUGGGCGGAGCCGGCACAGCGAAGCGGAGGACAGCGGCCGGCGGUCCGCAGCGAGGCGGAGGCCGGCGGCCGCGGCGGUAGGGCGGCGGGCCGCAGCGAGGCGGAGGCCGGCGACCGCGGGGCGGGGUGGCGGUCCGCAGCGAGGCGGAGGCCGACGGCGGGGCAGCGGUCUGCAGCAAGGCGGAGGCCGGCGGCGGGGCGGCUGGGCGGCGGGCCGCAGCGAGGCGAAGGCCGGCGGCCGCGGCGGCGGGGCAGCAGGCCACGGCGAGGCGGAGGCCGACGAAUGCGGGACGAGCGAAGGCCAACGGCUGCGGCGGGCCGCGGCGAGCGGCGGGCGGGCGUCGUCUUCGCCUCCCGUAGAUGCUCCUCCCCGUGCCUCCUCGUCUGGUUGUUGUGCUCGAGCUUGCCGCCUCCCGUAGAAGUACGCCGGCGUCCAGAGGUUGGGUAGGAAAGAGACGGAUGAGAGAGAGAGGGGGAUGGAGGAGAUUGGCAGUGUGGGACUCACCAUUGGCCAACCAAAUAGACUGACCAAAUGUAGCUAGUGAUGAGGAGGAUUUGGCCAGCCAAAUAGCUUGGCUAGUGAGUUGGAGAAGCCGUUGGAGUAUGUUUUUUUAGGUAGAAUGGCUAAAUGAGUCAAUUGGAGAGGCUAUUGGAGAUGCUCUAAAACUGAGCAAUCUUUUUAGCUAAAUUAGAAAUUUGUCCCUGACCAGAAGUAGUUUAGAUUCUUUUUAAUUAAGAUAACGGCCGGGAGUCUAAUUUCUGACCUCUGUGCCUACCAUUUUGCAUGGUGGUGUAUAUUUUCGUAUAUAUGCCAAAUGAAAGUACCGAAACUAAUUGGCCCUGGAAUGUCAAGAAAGUAGAAACGGUAUUUAAACGUUGUACGUGCGAAGCAAUCAUACAGUUUGAAGAAAAGUAAAAAAGGAAGCCUUGCCCCAAGUUUGGUCCGUCUCGCAAGUUCAAACUCAGAACCACUUUUGAUCCUUUGCACGAUCUGCCGUUACCAGACUAUUAGGUAGGCAAAACUCCGUAAACCUGAGCUACAUCCGCAUAAAUUUCCAAGUACGCCUUGUUUAGUACCAAAAUAAUUUUUCAAACUUCUAACUUUUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

383

LEP:

77.85%

ME_num:

108

MEP:

21.95%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.83

Avg Expression:

1.22

Tip: OSA-LNCN0045 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h	5.69065232407899	0.0335546318867836
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-4.67849037187072	0.0345684038596041
3	WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h	6.1032485257193	0.00525577203934885
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-4.49519490377272	0.0368229309181762
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-4.97045573320375	0.0232652452867052
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-5.11696546304089	0.0142979295394219