Chr:
Chr1
Start:
380109
End:
380387
Strand:
+
Ref_name:
OSA-LNCN0038
Sequence
(OSA-LNCN0038.1):
CUUGGGAUGAAUAAACAGAACAAACAAGCAGGGCAUGCUCACUAAGAAGUCGUCACUCACAAGUCCUCACAAGGAAGAAAAACCAGUGAUGUCAUACUCCAACAGCGUGAAUUUGCAUGAAAUUCAUGGUGCCUUCUUCCAUUUGUGAAUGUCUCUGUCGCGUUGAGAAAUGAUCAACACGUAUGCUGCUGCGGACCAUGAACAAAAGAGUGCCACAAAAAGCAAAAGCCAGAGUGCUAAAUAAAGGAAAGAUCCAAAGCCACUUCCCACAGCUUUACUAGGAACAAAGGCCUCCCAACUCAUCUGUACCUGCGGCAUCUUUUGAUGCAUCCAUUUCGAUGGAAUUCCAUCUCUUUCCCCAAAUUCACCAUGCCUUGAUCCGACUAGAAGAUUUGAACUGGAUCAUCCAAUCACUGGUGCAAACCGUUCACACAUUGCCCCGGAUACAUCUUUGAUGUAGAGGCCGGAUUGGAUUCCAUUAUCGAAGAAAAAAAAAGAAGUUGCGCCUGAAGCAGCGACAUAAAGCUAUUAGCCCAUCUUGUACCAUGAUUCUUGCAAAGAAGUGUUCUAGAAUGGCUGUACCUAACCUAAGUAGGAGUAGUCAGUAUUCAGAGGAAGAUUAGAUGGCCAAUCUAUCCUUCUCUUCCUCUCUAUUGCCUGCAAUUUCACAUGAGAUUGCAGGAAGUUCUUCAGCCGCUGCACUUUAUGGUGGCAGUUUCAAAAGCUGAUUGUAUAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.2%
ME_num:
MEP:
33.13%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
2.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.90072998810806 | 0.0456259077219293 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.7526596606283 | 8.9296255638097e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.09903033847109 | 0.00671888268952916 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.66962587154839 | 0.0365850994783428 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.56534852863335 | 0.00105384357689536 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.57672279711617 | 0.000591293183900374 |