Chr:
Chr1
Start:
1161013
End:
1162874
Strand:
+
Ref_name:
OSA-LNCN0027
Sequence
(OSA-LNCN0027.1):
CUAUUCAUUUGCUUAUAUAUAUGUAAAGUUUAUCUGACGGGAAAAUGUCUACUUGCAAAGAAAUAGCCGCGGAAACAUUAAUUCACCAGUUUAAAUAACUUGCAAUGAAGUUUUGUCAGCCAUUCACCAUUUAGAAAACAAUUCGCCCUUCGACAAAAACAAACCUUUUAUUUUGCACCAAUGGAUACCAUUUUGGUACUUACCUUCUGAUGGCUACAGUGCAAGAACAGGUACCCCAGCUAAGCUCCAAGGUUUAAUCAGGCCUUUUACUACUAGCAUAAAUUGAGACGUUGCUGGUUUUUUACGAUCCAUGAUAGAUAUUAAGGCUCAGAAAGUGUCUGAGAAUAUUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.5%
ME_num:
MEP:
71.95%
HE_num:
HEP:
9.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
9.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.2296871279184 | 0.0211633827987547 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.27928024778492 | 0.00013861245227961 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.20008035066435 | 0.0203314019777598 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.41295354477412 | 0.0280078177658095 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.18361898147689 | 0.0379845703867936 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.65346711040273 | 6.55562133798352e-07 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.01012350216532 | 0.00170360347571852 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.92727069580533 | 1.52108336188861e-17 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -2.10167053484858 | 3.53381793452083e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.59283658928621 | 0.00107012830814946 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.8485907158446 | 0.000551202806675731 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.84863842320667 | 0.00056692987409383 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.8487620720416 | 0.000553366984629695 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.08356870505787 | 1.08312484689e-10 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.74315843945557 | 1.56803585865545e-05 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.78598256181507 | 1.39460845846493e-15 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.19448935894531 | 0.0105088426883938 |