Chr:
Chr1
Start:
422449
End:
451409
Strand:
+
Ref_name:
OSA-LNCN0024
Sequence
(OSA-LNCN0024.1):
AAGGCCCACAGUAAUAGCCCACCUCAAAUGCAGUGUGCCUAAGCUUGUGGGCCGAAUCAGUAAAGCCCAACUGAGAGGUCUAAUUCUGGGCCGGUAUGGACGCAGCCGCGCCGGAUUACGUGUGGGCCGAGACGCGUACGGGAGCGUCCUCUUCCUCUUCUUCGCUCUCCACUCCGUCGUCCACCAUGGCAACCUCCGCCGUUGAUCCGGCCGCAGGUGGCGGCGGCGGCGGAAAAAUGGUCUGAAUCGACCCGCCGAAGAAGAUCUUAUAGAGUGGCGGUGAAACUGUUCCCAUGCGCCACUGCGUGAGUGCAGGUACGCCACAUCUCAAAUCGGAUUGCUCCGAUGAGGGUCACCUCCGGGAGCUAUCACUAUUCGAGAUCUGCUGCCGUGGAGUUGGCUUGUUCAAAGCGAAGUGUAUUCUGACCGCUAGUGUAGAGUGACGAUGGUGCAAUCCUGGUGCAGUGCAGGUCGGUGACGAUCUCCUAGUUGAUGUUGUUGAUCCCUGACCGGCGGCGACCUGUGGACUAUCCGGCAUGAUGUGUUAAAACUUUUUUGUAGUAAUUCUGUGGUGAUUUGGAUAUCUUGCAACAAUUUGCUCUCCAAUAUAUCUGAUAGAUGUGUCGCUCUCAGCAAUUUCUUUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.41%
ME_num:
MEP:
44.72%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.76
Avg Expression:
7.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.63397603569315 | 2.04136927379815e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.61338729323991 | 2.01258360109356e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.25457193494898 | 3.03628517362972e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.29270681085688 | 1.63993860990242e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.92033104056297 | 2.0188491533959e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.38741483174137 | 0.000152791764559506 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.16488680787037 | 1.1460753241117e-09 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.1351208678868 | 0.00104247494531042 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.53225009704559 | 1.74444991836158e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.26030816813392 | 2.59809042114032e-05 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.93953743398222 | 0.037845380234776 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.80360971844266 | 0.00353250878270047 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.95469028893399 | 2.80685334297082e-07 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.81739183369537 | 7.19324482248719e-16 |