Chr:
Chr1
Start:
729933
End:
731067
Strand:
-
Ref_name:
OSA-LNCN0023
Sequence
(OSA-LNCN0023.1):
ACCAAUUGAGUUGAGUUUUGAGUUAGGGUUUCGAGUUUAGUCGAAAUUUUUGUAAGGAGUGCUGUUGGUGCACUUUGUAAAUACAGAGAGAAGUAAUAAAGUCGUCAUCUACUUUAAGAGUUCUUCGAUUUGUGUUUAUCGGGUUUCGGCGGUCUAACCGGCGAUCUACCGGCGGUCAGACCGGCGGCAAGCGGCGGUCAGACCGGCGGCGUACAGGCGGUCAGACCGGCGGCAUCCUAGCGGUCAGACCGGCAAGGCAACUUCGGUCAGACCGAUCUUCAUCGAUUUCGAGGGUAUUCGGUGGGAAUACUUUGAGCUUAUUGUCUUCUCCAAACGUGAAGAACUCAACUCCAUUAUAAUUCAUGGACUUCUUCAUUCCUGCAAAAUAGGCAAUCGCGAGAGUAGAUCAGGCUCAAGAUUGGGUACUUCUAAGUUGUCGAGUUUGGGGGAGACUCCACCACGCUUUCGUACCUCUGAGAUAUAUGGAACAUUAUUUUGAUAUGGGAUAAAAGUAAUUCCUUGCUCAUGUAUUACUGUGGUUUGUACUGAUUGUUGAAGGAACCUUAGGACAAUUAUCAUGUCAUCAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.79%
ME_num:
MEP:
45.53%
HE_num:
HEP:
17.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.93
Avg Expression:
28.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.6734318887425 | 0.000870555838470432 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.18511057878289 | 0.00153937144713271 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.84029943129774 | 0.000363624375959143 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.59377061346017 | 0.000799391204247267 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | -1.86882589509429 | 0.0210336428423182 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.32444438282559 | 0.0385957319167452 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.64051298295622 | 1.90288993796788e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.05569876137825 | 0.0341201170850958 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.34418200653117 | 2.87723642293626e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.22111325482189 | 0.0052653793260957 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.34427564084803 | 3.03638500771113e-07 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.34435693410141 | 2.8971086088171e-07 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.77224781271334 | 6.40084403194063e-10 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.3510428932616 | 0.00123090454452876 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.03022183929925 | 5.09175285625355e-08 |