Chr:
Chr1
Start:
719589
End:
726797
Strand:
+
Ref_name:
OSA-LNCN0022
Sequence
(OSA-LNCN0022.1):
GAAACUGAAAAUGGGGCAUGGAUUAAGUGUGUUUGACUGUAACAUUACAGGAACAAUGGCAUAAUGCUUAAAAAUCAGAUUCUUACCUUGAGGUUGUCAAACCUCUUGCCAUCCUUUUGCAUAGUUUCCUGCACCAAAUCGGUCACCAUAGAUUCGCCGUAGUAACAAAUUCUUGGCGUCUGAGAGACAUCGCUUUCGGAUUUUGACUUUAGGAAGUCCAAGUAAUAUAACUGUAGGCAUAAGUUUACCGUUAGAUAAAUUUACUAUUAAUGAUGAAAAAAUAAUGGUUUUAAAGAUACUUACAAGAAGCACAGUCACAGGACCACUUAUGUAUACAGACGCGACACCACCAGGCUUGGUUGAUUUGGCACCAGGCUUGGUUGAUUUGGCUUGCGAUUUCCACCAUGAUUUAACACCAUCUUUUAAAUGGUUGAGAAGAACCUUGCGCCAAUUAAUUCUUUGUAUCCUUGCAAGGUUCAUACCCGCUUGCAUCUGGUGUAGAGUGAGAUAACCAUCCUUUUCUGGGAGCAGCAGUGUAUGGAAUGCGAUGAAGAAGAAGCACUUAACUUCCAGCUCAACAUCUUUGGUCUCCUUGGCUUCUUCCAUCACAUCACGUAAAUAAUCAACGCCAAUCUUGCCAUUCAUAAUAGUUUUAUGUUUUCUAUCCCUUUUCUUUUCAUCUGCAAUGGGCUCACAAUCAUCAACACUGUCAGGGAGCUUCAACAAAUUGUGAACAGCUUUCUUGAUUUCUCCUUGCUUCUUAGUGUCCUGCUCAAAUUCAAGGCUCUCACCAGAACCUUCAGGAACACCAACAACAUGUGCCACCACAUUCUCCGUGAUGGGGGGUAACUUAGAUCCUUCAAUCUUAAUCUCAACACCUUCAGAUGUUUGUUCUGUAUGUGUAUUGUUCAUAAGAAACCUCAAUAUCUCUCUGUUACCAAAACCCUCUAAGGACAUAUACAGUAACUGCUCAAAGCCUGCUGUUAUAACCACGUUCCGUGCAUCUGAUGACAGUUCCUGAGCUGCUAAAAUGACGCUGUUCGGACUGGACCGCGUAUGAAUCUUGGGAUCCUUCAUUUCAACCUCUGCAGUAGAAGCCUCCCCCUCUUUGGUAGCAUCAGCAUCCCCCUCUUCAGUAGAAGCAGCCUCGUCUUCUUUGAUAGCAUCAGCAUCCCCCUCUUCAGUAGAAGCAGCCUCGCCCAUAUUUGCAACCUCUAAAUUCACCUCCUCUCCAGAUCCCUCCCUCCCAGAAGGGCCCAUUGAUUCUCUGCACAAUCCAAGAUAAAUGUCAAGACAGAAAGCAAUAAGGAUGAACUCGUGGAUAAAUGCAUGAAUACAUGGAUUUGAGAAGCUCAACAUAAGUCCUUGUGUUUGUGCCAGUUCCUAUUCAGAUGCAAGCAAGUACUGACCAGCCGCCACAGACGAAGGAACACCAGGGGAAGAAUAAAUAGAUAAAGGAUAAACAGACGCCUAGACCCUGAACCCUAAGCCCGGAUAACCACAGUCGAAGGAUAACCAGGGGAAGGAUAAAUAGAUAAGGAUAAACAGACGCCAUCCCCGAUUAUCCUCACAUCAGACGCCUAGACCCUAAACACAUCAGAAAAAGGAUAAACACAGUCGAAGGAUAAACCAAAUCUUGACUUACCAAAGUGAUCACAGUUUCCCGUGCGCUCGGGGAAGGAGAGCCGGAGGUAAUCGUGGAGGAACGUCGGGGCACGGAGCGUCGGGUGAGGAUCGUCGGGUGAGGCUUCUGGCAAGAAGGUGAGGAAGCAAAGAGGUGAGGAAGCUUCGAAAUUUUGGGUGGGGAACUGGCGGUUUUGUUUAAAUGGAAUCGGAAUGGUUUUCUGUUUCGCAAAAAAAAAACGACAAUGUAAAAAAAAACGCGUGUAAAAAAAAAAGAACACUGCCGCAGCCGAGGCCCGUGCCCUCGCCGGUGGCCAUCGGCCUGCUGCGCCGCCGCAGCCGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.17%
ME_num:
MEP:
59.96%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.81
Avg Expression:
20.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.30242455770285 | 0.00537581100698482 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.50799316040602 | 0.00169467042505373 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.31377105672732 | 0.00685241942584105 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.26926333248851 | 9.23379835576385e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.86316569941798 | 0.0446785563833841 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.30359872305174 | 0.00261828953673775 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.17803712148714 | 0.0112391709719354 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.35200494140987 | 8.92214012786594e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.28408542079301 | 0.00234437458902067 |