Chr:
Chr1
Start:
672148
End:
673581
Strand:
.
Ref_name:
OSA-LNCN0020
Sequence
(OSA-LNCN0020.1):
AGCAUUGGACCCACACGGGCUUACAUGUCAGCUGACAUGUCAACGCCGGCCGACGAGUGGAGAGGAGGCCGGCAGCAGGAUCCGAGUGGUCCGGCCCUACCAUAUAUCAGAAAAAAAAAACAAAUGGCGAUCGCGGCAUGGAAAGCGGAAACCGAAGCGUCGCGCGGACGUGUGCGUGAGCGUGACAUACUACGCACGAACUGGGGCAGAGAUGCAGAUCGAAUCGAGGCCGUCAUCGAACCGUUGUGCUGGCUGGUCAUACGCCUCGAACCGUCGCAUCGAGCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.3%
ME_num:
MEP:
12.8%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.99
Avg Expression:
20.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.0287969179082 | 7.76381446553591e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.38784877000519 | 3.73239702364002e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.30573838906043 | 0.0141108941957766 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.56255566855588 | 2.51322967336838e-06 |
| 5 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.01210852968532 | 3.44326991183332e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.77051712751802 | 0.0019520799693579 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.66638795737814 | 0.00173332213699025 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.29234792938402 | 1.33990556267631e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.78988576614384 | 0.00133499094974897 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.7709263579721 | 5.14491669159918e-08 |