Chr:
Chr1
Start:
633712
End:
639304
Strand:
-
Ref_name:
OSA-LNCN0018
Sequence
(OSA-LNCN0018.1):
UGCAAAUGAAUGAUAGUGGCUACAGUAGAAAUGGAACAAUCGGUGUUAGUACUUUAUUGGGCAGCGAAGUAUGUGGUCAAAUUGUCAAAAUCCUUAACAGUAGCAGCCACUGAUCAGUUUGGAAUAUUGGGCUGGAACUGGAGUGGUUCAGAGAAGCUUCUCAUCCUGCAGAUUUUCUGACAGAUGAGUCAAUCAAUCAUCAACAAGCUAGCAUGCCAAUACUCAAGAGGUGGUGCAUUCAGAUAGCAGACAUGAACGGCGUGGGGAAUCUUGAUCCUGUUUUGCUCAUGACUCUGCUUGUGAUCACACGCAAAAAAUGCACCCACAUUUUUUCAGACAACAGGAGAAUAUUAGUACAACCCAGAAUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.57%
ME_num:
MEP:
78.86%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.75
Avg Expression:
10.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.92179876973783 | 1.34755601678564e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.42076334459539 | 5.0693374046255e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.17972880846323 | 7.19727017284772e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.20171922656126 | 5.27766100227937e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.76600950935594 | 1.00828090616819e-20 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.74974970713997 | 4.34808045780058e-22 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.04625942778703 | 9.82448998650103e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.35080020836874 | 1.53229331184875e-22 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.23610365258392 | 0.0205597145402668 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.1691457301952 | 9.00115390784906e-05 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.50299379791114 | 0.0372088018719669 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.22519996642588 | 3.41340750194385e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.78179714277563 | 2.96616715379308e-30 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.68914262636592 | 1.08827095405452e-25 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.99788106659174 | 0.00327203960076656 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.60313941467653 | 0.00987500434372615 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.58159104008891 | 0.00111771509496709 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.29145384821807 | 4.80054261341918e-16 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.35677668085541 | 0.00016108155562333 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.11421627499817 | 1.1234773646206e-36 |