Chr:
Chr1
Start:
508687
End:
512301
Strand:
+
Ref_name:
OSA-LNCN0015
Sequence
(OSA-LNCN0015.1):
GGCGGUUAGGGGUGAAGCUCUUCGGCCAGCUCCCAGAUGGAGGCCUCCGCCUGAAGGUACAGCUGGAUCGAGGAGAGGGAGGCGAAUUGAUCGACGGAUCAUCAAUUGAACAGCUUAAGGAUCCCCAGCUUCUUAUUAAUUGGUCCAAUUCAGGCUCAAGCCCGGCCGCUUUUCUUUUUCUAAUUUCUUUUCCCUUCUUAUCAUCUGCGCUGUGUCUGGUUCAUCGAUUGAUCCAUCAUCAGGUGGUCAAUCUGGAGUAGUUAGUAUACUAGUAGCAGUAAUUCUGAGUCUUUUGGACUGCACGACUACUUAAUUUUGGAGUAUCCAUCCAGCUUUUAAUUACCAAGCAGUACUACAAACCUGUCUUUGGAGUAGUAGACAAAGAAAAAGUUGUAGGUAGACGGGCAGAUCAAUUACAUUCUACGCCUGUUAUGAUCAAUCGACGGCAUUUUGUUAUUUGAUCAUUGUGAGUAAACGACCUACAUUGUUAUUUGAUCACACCACUAUUUUGUUAUUCUGCACCUGUUGUUUUUAAUGAUCAUCGUGAGUACCUAGUUAACCGCCAACCACGAUAUUACUUAAUUAUGGUGUACUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.32%
ME_num:
MEP:
16.26%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.93
Avg Expression:
1.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 6.63959942201651 | 0.0391373097936847 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.67943123776347 | 0.0462763677850742 |