Chr:
Chr1
Start:
253624
End:
254964
Strand:
+
Ref_name:
OSA-LNCN0007
Sequence
(OSA-LNCN0007.1):
AGCAACUGCUGAUGCUUGCAUUUGAAUUAUAUUGAGUUUGUAGGUCUUCCAAUUUAUAUGUACAAGAUACAAAUGAAGAAUAUUCAUAAAUGAUUGUGGGAUAAGUUCAGACCCACAUGAAAGGUUCUGCAACGUGUUUUCAGUUUUGAUUUUUUUUAAAGAGAUCCUAUGAGAAAUUCUAGAUGCGCUUCUUCAUUCUAUGAUGGGUUGUCUAUAUACAUUAGUUUUCCUUGAUUACACAUGAGCGCAUGUACCACUAAUAUAGUUGCCAUCGGCUCCAUGUUCUUCCUAUUUCUUUACAAAAUAUCCUAUUGUUAUAGCAAGUGUACUUACUUUUUGGAUAGGAGUUCAUGAAAAUUGUUCUUUUGUAUACAGCAUCCAUGAUUUAUAUUUAUGUCUUAGUUGUUCUUUAUCUUGAGACAAGCAAGGUGACAGAUCCUUCUUGCAAAACAAAACUCCUACUUUUGUUGAGAGGGGCAACCCAUUGUCCUCAGCUCA
Sequence
(OSA-LNCN0007.2):
GCUUGCAUUUGAAUUAUAUUGAGAUGGUGAUAGGGAUCAGCAAGCGUGCAGUACAUCUCAAGCACCUGCAAGCUGGUGGUUGGAUCUUUACUGGCCAUAGCUACUAAUUCUUUUUUAUGAAAAAAAUUCCUCAAUCAAAUAAAUCUCAAAUAUCAGAUUAUAUCUGGUCAGUGUAACUAAUGUGUUAUCCUGACUCUGAAGUCAAUUUUGAAUAAUCUUGAAUUGGAUCAAUGCAAAGAUAUCUUCUAUUCUUUACCCUUUGCAUUAUCGAGGAUUGGUGAACAUGUUAAGUUCAGAUGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.5%
ME_num:
MEP:
57.52%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.68
Avg Expression:
3.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.14278325328825 | 0.00527390504307729 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.68857866263741 | 6.58679239750059e-06 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.94194319827044 | 0.0268256315392764 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.84408697508977 | 0.037414356176623 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.7053366889022 | 0.00868796836209347 |