Chr:
Chr1
Start:
133497
End:
134326
Strand:
-
Ref_name:
OSA-LNCN0004
Sequence
(OSA-LNCN0004.1):
AUAAUGAUGACGUCAUUACAAACGGUUACGGGUAAGGUAUACCCUCUACCCUUCGAUAUACGUCACACAUCGAUAUGGUAUACAUACGCGUAUACGGACGUUUUCGGCAUACGUUAAGGAAAUUCAUCAUGGAGUUCACAGAUGGAAGGAGUCCUACUCGGACAGAACUGGGUCGUCAUUGUAUCGUGCCGAGUCCGAUGUCUCCGAGUCCUACUUUGAGACCAGUUGACCUGCGAUAUAAAAGGGACCCCCCGGGAGGACCUAAGUGAUUGAAUCUCAUAGUCAGCACAUCCACCACAGCCUACGGAGUUGAAGCCUACAGGAGCCAAGUCGCCGGGUGAUCUAGUCGAAUCAACUCGACUACGAUCUCGUCGGUAUCAUCGAGUUCUGCUUUUCCUUCUGUAAUCUGUGGUUUCCAUCAUAUAAUCCCAUAUCAACUGGAUUAGGGCUAUUACCUAUCAAGGGGCCUGAACCAGUAUAAUCUUUGUUUUCUGUCUGCUUGAUGUCGUAUUACGUAGAUCCUCAUACCAGCGUACCCCAAUACCCUCUAUAUUCGGUCUACGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
85.77%
ME_num:
MEP:
12.6%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.75956561753273 | 0.042491524297163 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.824433669346 | 0.0467238252806275 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.71546070703959 | 0.0426656327109069 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.42620947680083 | 0.00700731986460673 |