Chr:
Chr1
Start:
1001
End:
1246
Strand:
.
Ref_name:
OSA-LNCN0001
Sequence
(OSA-LNCN0001.1):
CUAAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAACCCUAAACCCUAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAAACCCUAAACAGCUGACAGUACGAUAGAUCCACGCGAGAGGAACCGGAGAGACAACGGGAUCCAGGCGCCAGCGACGGAUCCGGGCGAGAGGGGAGUGGAGAUCAUGGAUCCGUGCGGGAGGGGAAGAAGUCGCCGAAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.93%
ME_num:
MEP:
1.63%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
18.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.46037418116915 | 0.0298076682616799 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.56313564318601 | 0.0197530386878266 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.71152604442242 | 0.0151347432812973 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.82268995836033 | 0.0114951316986693 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.42824765834073 | 0.035752786269736 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.00321245679707 | 0.00783455143471248 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.41627966700821 | 0.0304411880295524 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.14368170147541 | 0.00434827927727747 |