Chr:
Chr7
Start:
10112177
End:
10114213
Strand:
-
Ref_name:
LOC9272721
Sequence
(XR_001547326.2):
CGUUGACAAGUUAAAGAGAACUUAGAUGGACUUAUUCCACACCAAAAUACCACAUCACUCCCCAGUCCUCGUUGCCCUCUUGCCGAGCCGUCCUCCGCCAUGCUCCGUACUCCAUCUCCGAUCGGCGACCCGCCCUGAGCCGGCGGAGCCGCUCGACGUUAGGGCCCCACCUCACCAGGCGACGGCGUGGGCAUCCUCGAUUCUCAGGGGUGUGGCGGCGUCGGCGGCGGCGCAACGGUGGGCGCCGUCCAUCCCUCCCAGCCGGCUCGGCCUGGUGACCGGAUUCAGAGAUGACGGCGAGAUGCAAAUUUGUCAGGCAAUGUGAUUAAGUAGAUAUGCAUCCUGGUUGGUCACAAGGUGUUAUGCUCACGCCUCGAUAUGGUUCUUGCGUAGCCACAGAAAGGAGCAGCUACUAUGUGCUUACUCCAGCCACUGGAGUUGUAUACAACUUGCCUGUGAAUCCAGCAGAGGAGCAUGUGUACCAUGUCCAGUUGAUCACCUGCACAGACCUUACCCUCAUUUGCAUUUGGGCAUGUUGCUUCCAUGGGAGAGUACAAGGUGAUCCAUAUUUACAGACCUAGAGCUACAUCAGCUCUGUGAGUUCAUUACUGUCAAGUGUGGCACUCACCAUGCAGACCUAUGUUGAAACACAGGCAAACAUCAAUGUUAUCUCUUAUUGGGUGGUGUACUUGAUGGAUAUUGGAUUGUGUAUAUGAGCUAUGAUAAUAUGUGGUGUAGGUACCUUCAUCCAUCAGUAUUUCAUCUGUUGUUUCAAUCUUGGGAUGGAGCAAGAAACGGGAUGUCCAGGGACCAAUUAGCAGCAUUUUAUUUUAUUUUAUCUUUUUGAGAAAGCGAUUUUCCUGAGGAGUAUAUGUCAAUUGGCAUCAACAGUUUCACUGAACUGAAAGGCUACUUAGUUUUAGUAUACCACCAGCAUUACUGUUGAACCAUGGAUUAAAGAGUAUACAUUCAGUCUGGAUCAUUCAUCCCUGUUAUUGAGUAGGAUAUAAAGCCAAUAAGCCAUUGUUGGCGUUAGAUGAUGGGAGGAUAUUCUUCUGUCUAGGAUGGACUGGAUUGCUAAGCAUACCUGAUGAGACAUUUUGCACUUUUCCAAGAACCAGCACUUUGCAGAAGUGGAGAUGAGACAUCUUGCUGGAAAUAGCACACAGCAAAACAGAUGACUUUACAAAAUGGUGAUGUAGUGCAGUAUUGCAAUGUAUUGCUACUCCCUUCAGUUUGCAGUUGAUGAAAUUUGCAAGAACCAUCCAUUGCUUUUGGAAUUGAUCGUUGGGCAGAAUCAUAAAUUUUGGCUGUGAUUCUUUUCUACUGUUGAAUUGAAGCCUGCAAAGAUGUCUUCGAUUCUUGAAGAUGAUAGUUUUUUUUCUCUUUCAUUUUGUACUAUCUUCUGAGAUUGUAAUAUAAGGUGUACUUGUCAGCAUAUAUCAUAGUAUCUGACAUAAUUUAGGGCUGCUGCAACUUUGUUUUGCAGUAAAAAGGUGACAGAUUGCCAGUGCCACUUGUGUUGUAGGUGAAAUUCGCUGUGCAUGUAAAAGGAUGCGGUUUGAAUGCUUAUCAUAUAAUCUCUGUUACUGUUAUCUAGAUAUAAUGCACAAGCUCUUUGAGCUCAUAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
12.4%
ME_num:
MEP:
59.76%
HE_num:
HEP:
27.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.67
Avg Expression:
9.41
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.02120102069651 | 9.04600731181643e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.01898716375106 | 4.73951729886914e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.61264105447996 | 0.0026020673800835 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.93772046526098 | 5.13167710303581e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.66197341667704 | 0.00439123839050615 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.45034263198101 | 1.80267246286739e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.78087400834696 | 0.000605768460027759 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.36289758858414 | 0.000802530907156238 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.56312847365635 | 0.000182530353066816 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.80429467216912 | 1.91829325729945e-06 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.5292250677653 | 0.0124987943458051 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | 1.96465532665843 | 0.0260525468613319 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.02670061098485 | 3.39994914203673e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.60042298622736 | 0.00538121863106919 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.07839113715168 | 0.0323112004020405 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.17446868984773 | 9.14060910497075e-05 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.82150902749666 | 0.000753208884428812 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.53282201429077 | 0.0368410097805104 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.38673740868146 | 0.00646347492116016 |