Chr:
Chr2
Start:
2674434
End:
2676653
Strand:
-
Ref_name:
LOC9272718
Sequence
(XR_001542942.2):
UUUUUUCAUUUUCUUUCUUCUUCCUUAUCCUUUUCUCUCUUUCUCAGCCUCACCCGCCGCUUCGCCCGUCAUCGGCGAUCGCAGCACUCGCCCGCCGCCGCCGCUCCACCAGUCCACCCACAGCGCGAGCAGCGUGCUCAGCAUGUACACCAGUAGCCUCCCCGCCAGCCGUGGCGCCGACCGAUAGUCCACCCCGCCGUCCCGCAUCAGCCCUAACAAGAACCCCUCGUCGUGCGGCACCCUCCUUGUGUAGCACAGCCACCUCGCCGCCGAGGCGCUUCUGCGGGACUCGCCCGUGCCGGCGUCGGUGUCCUCGCCGCCCCCCCCCCCCCCCCACAUCGUCCGUGGCCCUGUGGAAGUAGAUGCGGCGGGAGUCCUCCUCGAACGCGACGGCGGUGACGUCGCCCGCGCGGAGGCCAGUCAAGAGGUCCGAGUAGGCCACCUCCUUGGCUGCAUUCUUGGGCAGCGCGAGGCGGACAGCGAGGAGGAGGAACGCCAGGACGAUGGGCGCCACCCACCGCCCUUCCCAGUAGUCACAUCUAGCCUCCUCCCCUCCUCCUGCCAUUGAUGGAUGCUUACCUAAUUUGCCGGAAGUGACGACGGACCGGAGCGCGGCGUUCCACAGCGCGUCGACAGGGUAAAACCAGAGGAGGUUGAAGAGAAACAAGGUGAGCACGGCGCAGACGAGCCAAGCGGAGACGACUCUAUUGAGGAAGCUGCAAAGGUUGCUGGUGGUGGUGGUGGUGGUGGUCGCCGGAGUUGGACACGACAGCCGGGUGGCGCCGUGGCCCGUGACGCGGUGGCUCGCGCGUGGCCAUAGCUAGCGCGUACGACGAGGACGACGAGGUCGUACGACGUCGAACAGGCUACCUGUUCAACCGAAUGCAGCAGGGAGACAACUCUCAGCUUGAUCGUGUUUGCAACUAUGCACCAACAGUGUCUCCAGUGGGCUGAGUUCUGCACUAUCCACCUGUAUAUGUAUUGGUCAAGAAAGUGAGCACAGAUGUAUGUAUUCAGUUCUGAAAUGAUUACUUGUUAAUAGUUAUUAUCAGUCUGCCGUAGUUUUGAUUCUUUCUUCUUGAGAGAGCUAUAUUAUGCUUGUAAGAUUGUGGCAAGCUUGGAUUCUUUAUUCUACUUGCGCAUUACUACUUACUUUACAUACCAUCUGAAUUCUGUUGUACCACCUUUCUAAGUAGGAUCAUUUUCACUCUCAUCUAGAAUGCACGCACGUUAAUGUUUAGUUUGAUCACCAUCUUUAUCCCAUAUAUGUGAUGCUGUGCAAAAACUGAACAAGGGAUAGACGGGUGGGAGGCGAGGAGAUGGCGGAUCCGGCCGCCGCUCCGCACCCCACGUGCGCGGAUCCAGCUGCGCUGGGGUGUGUCCGAUGUGGAUGCGGGCGGCAUGACGGCGGAUCCAGCGUGGUUCUUGCACGGGUAAUGGCGGACACGACUGUGACGAGCGACUGCGGGCGGGAGGCGAGGCGGCGGCGGAUCCGGCCACCACUCUGCCCCACGCACACGGCGCGACCUCCGCGGCGGCGAGCCUAGACUCCGAUGGAUAUGGAGGAGCAGCAGCGGCCACCUCCAUGACGCGCCACUGUCAAUGUCCGGAGCAAGCGCCAAUAAAAAUUUAACUUAUUCUUAUAGAUUGUGAGGAUGUAUAUGUUCAGUCAAAAUUUUCUUGUCAUACCAAGUUAAUUUUUUACUCUGUAAGGAUACCAAGCAUAUGAUGUAUAUGGAAAGGGGUUUCUAAUGAAUACAUAGCGCCGGCUUUAUUAAGAGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.54%
ME_num:
MEP:
20.53%
HE_num:
HEP:
45.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.80
Avg Expression:
16.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.44960260366662 | 0.00239318731264317 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.372355348702 | 1.87901686442714e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.53105132688027 | 0.000539794329852925 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.13569779563367 | 0.0129397615149708 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.53669336274997 | 6.42796908124826e-28 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.1568249558263 | 4.38299871993098e-05 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.07281380599452 | 2.42217538989638e-06 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.21193518165568 | 5.53114457713066e-12 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.20899847331337 | 5.17700754433338e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.16394608673544 | 0.00249509183330169 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.34254113302796 | 3.91291449326507e-12 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.35409973369885 | 2.09224778237272e-07 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.05698178673078 | 0.0260945840884448 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.22707791658111 | 0.000128844584317921 |