Chr:
Chr10
Start:
3891366
End:
3892324
Strand:
-
Ref_name:
LOC9272652
Sequence
(XR_001540417.2):
UUCUCUCUCACACUUUCCCUUCCUUCUCUCGCUUUUUUCUUCUCUCUCGGCUGCUUGCAGGCAGGAGAGCGCCGGCAGCGAUCCAAAUGGCGUAGGCAGGAGGGCGCCGGAGGGCAGGGCACCGGGGUGCGCCAGGGUAGAGGGAGGGAGCUCCGGCACGGUUGGGGAUGCGACGAGAGCGGCUGUGCUCGGCGGGCGCGGCAACGAUAGGACCGCGGUGGCUUUGGGCCGGCGGCGCAGCUUGGUUCGGCUUCGGCGAUGGCGUGGUGCGAGCUCGACGCACGCGUGGCGUCCAGGAGCCAGAAGGAGGAUGGGGGCGGCGUCGGGCGGCUCGGCGGCGCUCGGGAAGGAAGGGCGUGACGUUGGCGGGCAGAUAGAAGACCUCCUUCCCCACGCCACUUCUUCGAUCUAGAAGUGGCGCGGUGAUGAACGACGCGGUGAUGAAUGACGGACGAAGAAGUGACGGACGAAAAAUCACGUGGGUGAAAAAGAUGUGACGAAAAAUCACGCGGGUGAAAAGAUGCGACGACCGGAAAAAUAUAUUACUAGCAAAAAGUGUCCGUGGGUUGCAACGGAAAGUGUACAGACUAGAAAAUUAAGAAAAAUUUAAGAAAAAUUUACAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.23%
ME_num:
MEP:
53.66%
HE_num:
HEP:
31.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.79
Avg Expression:
14.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.16612095936306 | 2.78075740456402e-10 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.18307207983128 | 0.0100303442201623 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.3113011261614 | 0.000139357848225536 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.97771671408473 | 2.60076262440139e-05 |