Chr:
Chr7
Start:
24744437
End:
24745163
Strand:
+
Ref_name:
LOC9272627
Sequence
(XR_001547650.2):
CGACUGAGAACUGCAAGUCUGCAACCAUAUAUAGAAAUCAAGAGAAAUCAAAGUGUGAUAGCUAGCCUUAACUCUGCUCAUGGCUCUUCUGAAGUGCAAUGGCUCAAGGGCUUCGUCCCUAGUGACCCUCCUGCUGAUUGCAGCUCUGCUCUUUCCAGCUGUUUGCUACGCACAUGUUGAGGCGAAGACAGUGUGCCAGAAGACGGAAUACGGGUGCACGCAGGAGAAAUGCCACCAGAUGUGCCUGGGUGACGGCCGGACGGUAGCAUCUCAGUAUUGCAGGCAUUAUGAUACCCAAUGCUGUUGCACUUAUGAGCUUCAAGCAAAUGACAACGAUAAGAUGGAUGAUGGCCGGCUUCAUGCUUAGUUAAUUAGAAUAUCGCCAAUUUAUCUCCUGCAUGUUUUACUAGCUAUGCGUAGAUCUGCGUGAUGCAGAUCCAAUAAAGUUGGUAUAUAUGGUUAAUCCUAGAAAAAAUAAUGUUGGUCUUGUUGUCAAGGAGUUAAUUUCAUGAUCAAUGCACAACUACCUCCCUAAAAAAAAAACAAUCAUCGUGUGUUCAGGUUCAUUGUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
2.03%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.97
Avg Expression:
452.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.32012810494025 | 0.0478011622223415 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.63789527506637 | 0.0244857748308123 |