OSA-LNC9272619


Function Link


Basic Info

Chr:

Chr9

Start:

4492824

End:

4498215

Strand:

-

Ref_name:

LOC9272619

Sequence
(XR_001548589.2):

UUUGUCAGGCCUCCGCACGCUCCUCCGGUGAGGCCGAGGCAUCUGCCGACUCCUCCAGCGCAAGCGCCGCACCUCCCUGUUGCUUCUCUACCGCCGCCUCCUCCUCUCCCUCCCUAUAGUCCCUUCGUGAGCGCCACCUCGCCCAGCCCGCAUCGCGACUCUGCCGGGACAACGCGCUCCGCCCCCAAAUUCCACGCGCCGCCGAAUUCCAUGCGCUGCCGCACCGAAUCCGAAGACGGCCGCCCUCUUUUCCCCAUCCUGAAGCCUAGCCGCAUGCUGCCUUUGCUCGCUGCCGUCGUGCCGCAGCGCUGCCUGGUUCUUCAUGAGAGAGAGAGAGAGAGCGAGAGAGGAGGGAGGGAGGGAGGGAGAGGAGAGGUGCUCCUCCUUGGCGGCUCCCAUUCCGUUUCGACAGCGCCGGAGCCUCCCUCAUAGAUGAAAAUUCACCUUAAAAUUAUUGGAUUGUUGGAUUCUAUUUUUAUCUAUCUAUUUGCAUAUAUGAAAAUUGUAUGUCGUAUGCAUAUCAUAAAUCCACAUUACUGGUUAACCUAUUCAUAAGCCCAAAAAUAAUAAUGAUUUCUUGCAACUGUGCUUUUGUAAUAAUAAUCCUUUCCCAAAUGCAGAUGAGCAAUGAAUAAGAAUUUGGGUCAAUCAAUUGCACACCUCAAAGAAGUUUUAAGGAGCUAGAAAGGAUAAUGAGGUUUUGGAGCCUCAUUGCCAUUUCUAACCCAGGUGCACAAACUGUAAAGACUAGGCAAGACUUGUGGCUAACAGGGCAAUGAGAACCUGGAAGAAGGGGGCUGGAAAUGUUACAAAUUGUCAAGCCAUGAUUUCCAGAGUGGACGUUCAUGCACUUUUAUCCUAUUCAAAAGUAGAAUAAAAUCUUCUCGGAAGCAGAAUUUCCAGAGGUUGAAAGAUGGCUAGAUCGUUUCUGAAGAUAAGAUCGUUUCUUCGCUUCCAAAUGUUUCAAAAAGCUAUAGCAAUGACUUCAAUAAAGAAAGAGUGAGCAAAGUCUCUUUUAGCUGUGGUUACCAUGUUCAUGAAUUCUCGAGUUGUGUGCCAACGGAUAUGAAGGAAUGUCCAACAUUGUACGGCGAAGGAGCAAGUGAAGAACAGGUGACUUACAUUGAAAUUCUUUCUGUGCAUCAAGUCUUUUGUGUUAAGACGAUCCAUCAUGAGGAGCCAUAGGAAAACUUUUAGUUUCAUAGUGCAUUUGCUCUUCCAGAUAAGAGUGAGAGGUAUAUCUGGUGUAAUAUGGGCAAAGAAUAAUGAGUACAUUUUCUUUGCUUGGAAAGAUGGGCAGCUCCAUUUGUAAUGCCAGUUGUCAUCUGAGUUGUUCAAGCUCGUGUUCUGAAGGCUGGACUGCAGUAAAUUCCAAUCUUACAUUGCUUGCGCAGAGAGGUAGGUGGAACAAUUUUUGGAGGGAUUGAUCAUUUAAGAAUCCAAAAACCGAGAUGUCUUCAUUUCUAGAGAAAGAGAACAGGGUGGUGAACCUCUCUGCCAGUGAAUUUCCAGUCCCAUUCCAAUCAUCCUUCCAAAAAACAGUCGUGUCUCCACUAUUGAUUUUAGUUAUUGUGAUCGCUCUGAAUAGGGGGAUAAGUCUGAAAAUGUCCUUCCACCAAAAAGAUCAUUUUUCUGUAUGAGCAUGUGGAGGUAGAUCUGCAUUGAGGUAAUAUUUUCUCCAUAUUAGUUUGACCCAAGGGAGAUUGUGUUUGUUGUAGAAUUUAUCCAGGUGCUUUGUCAAGAGAGCAAUGUUUUGGUAUUCAAGAUCUAUAAUCCCCAGACCACCUUUGUCUUUGGGUUUACAGACUAAGUUCCACGAAGCUAGAGACUGUGACUUUUCAGUGAUAUUUGAUGAUUUCCUCCAUAAGCAGUGCCUUCUUGCCUUGUCAAUGUGUGAUAUAACCUUUUUUGAUAAUCUGAGUGUGCACAUGUAAUAUGUGGGAAAUGAGGAUAGGACCGAAUUAACCAAAGUCAGACGUUGCCCAUAAAUGUGUACUCUGUAUCCUAGUUUGGGUAUUUCUUUUGGUGCUGUGGGUGUUUUCAAUGUUUCAUUGAGCUACACUCUUUUUUGAUUAUUAGACUGUAAUAAUUGGCUAUAGCUCUUUCGAGCAAAGGCCGGGAUAUUUUUUUCCAUUAUCUAAAAAAAAACCAGAGUCAGACGUUGCCCAUAAUUAAGAAAGGUUCCGAUGGGUGACAUUCUUCUUUCCACUCUAUCAAGCAAAGGAGCAUAAUCCACUAUUUCUUGGCUUGGCAUGUCCCAUGGGUAGCCCCAGAUAAGUGAAGGGUAGAGAACCAAUUUGGCAGCCUAAAGUUCCAGCUAGGAUCUGCAAUUUCUCUUCAUGAUCAAUGAUGGGAAUCAUACAUGAUUUAUGAAAGUUGACUUUUAGACCAGCGAUUUGAGCAAAAAGUUGUAGAAGAGCUUUGAGACAGAAGAUUACUAAUCAUCAGUUUCAUGAAUCAAUUUGAAAGAGACACAUACUGGUUUUCAUGGACAAUUUGUAAGAUUACUAAUUGAAGUCUAUUCAGCCAUGAUCUUUGUCACAAAUUUUAGAGAGGAGUUUUGAAGGGCAAUUGGUCUGUAAUCAUUAGCCGACUCUGGAUUUUGCUUUUUCAGAAUGAGGGUGAUGUACUGAUGUUAGAGGUGUUUAGAUUCUGGAUAGAAAUUUGUUCCUCGAAGAAACCCUUGGCUAGGUUAUAGUAAUCCUCUGAAAUAAUAUCCCAACACUUUUGAAGGAAAAGGCCAUUGAAGCCAUCUAUGCUAAGAGCUCUGUCUGUGGGCAUUUUCUUGAUGAUGUUGUCCAUCUCUUCUUUGGAGGGAGGAAGAGAUAGGCUUUCCAAGUUGUCUGUUCUUUGAAUCAGGGUUGAAAGGUCUAUGAAGAUCUCGAGUUCAGCAGAGGUACUCAUUCUUUCUUUGUAGGUGUUGUACAGAAUUGAAGCUUUGUCGACAUGGGAGGUUACUGUGAUGCUGUCAUCUAUGGAAAGAUGAUAUAUUUUGUUUCUUCGGUGACGAUCAGUGGCUGAAGCUUGGAAGAAUUUGAUGUUCUCAUCUCCAAAUUUGACAUAUCGAAUGGUACACCUUUUUUUUCCAGAAUUCGUUUUUGUAUCUCAACAGAUUCAGGAUGUGCAGCUUUAUGAUCUUUCUGAAGUUAAAUUCCUGAAUAAAGAGAGGUCUUUUCUCUUCCAGUA

Sequence
(XR_003238671.1):

UUUGUCAGGCCUCCGCACGCUCCUCCGGUGAGGCCGAGGCAUCUGCCGACUCCUCCAGCGCAAGCGCCGCACCUCCCUGUUGCUUCUCUACCGCCGCCUCCUCCUCUCCCUCCCUAUAGUCCCUUCGUGAGCGCCACCUCGCCCAGCCCGCAUCGCGACUCUGCCGGGACAACGCGCUCCGCCCCCAAAUUCCACGCGCCGCCGAAUUCCAUGCGCUGCCGCACCGAAUCCGAAGACGGCCGCCCUCUUUUCCCCAUCCUGAAGCCUAGCCGCAUGCUGCCUUUGCUCGCUGCCGUCGUGCCGCAGCGCUGCCUGGUUCUUCAUGAGAGAGAGAGAGAGAGCGAGAGAGGAGGGAGGGAGGGAGGGAGAGGAGAGGUGCUCCUCCUUGGCGGCUCCCAUUCCGUUUCGACAGCGCCGGAGCCUCCCUCAUAGAUGAAAAUUCACCUUAAAAUUAUUGGAUUGUUGGAUUCUAUUUUUAUCUAUCUAUUUGCAUAUAUGAAAAUUGUAUGUCGUAUGCAUAUCAUAAAUCCACAUUACUGGUUAACCUAUUCAUAAGCCCAAAAAUAAUAAUGAUUUCUUGCAACUGUGCUUUUGUAAUAAUAAUCCUUUCCCAAAUGCAGAUGAGCAAUGAAUAAGAAUUUGGGUCAAUCAAUUGCACACCUCAAAGAAGUUUUAAGGAGCUAGAAAGGAUAAUGAGGUUUUGGAGCCUCAUUGCCAUUUCUAACCCAGGUGCACAAACUGUAAAGACUAGGCAAGACUUGUGGCUAACAGGGCAAUGAGAACCUGGAAGAAGGUAGUUCUACAAUGUUAUUCAAUUGUGAAUGGACUUAAUAAAUACUAAAUAUCAAACUUAUCCUGCUCUAAGUAGUGAUUUAGUAUAUAUGAUGUUAAUCAUGCAUUGCAGCCUGCUUAGAAAGCAUACGGAUUUUAGGAUUCGAGAGUGAGAUAGACCAUGGAAAAUAUAAGCAUAGAAAGCAUAUAUGAGAACUGAUAUACAACCAUUUUUAAUCAUAAGCCACUACUACUGCUUUUUAGACAGUUUUGUGAUGAUGAUACAUUGGCACUUUAUUAAAGAAUUAUAGUAAUUUCAUAAUAUUACGAAAAAUAGUGGAUAGAUUUACAAUGCCAAAAUCAGACGCCCAUACCUAAUUCUAACCACAAAAAUAUUUUAUUGGAGUUUUCAGAAUUCAAAGCCAAUAGGGUGCUUCCAAAUGUUCAAUCAUGUCAGUUUUUCCCAGAAGGGCCUUAUUGUUAAUCAUAUUGUUCAUGAACUUUUCAAAAUGCUGAAAUUAGAUUAAGAAUCACAUCUUGCUAAUAAAAGCAAGAUUAGAGAAAUAUAAAACAACUUGAUCAUAUUUUUCUUAUCACUAGGUUAUAAUAUUUCACACACUAACUCUUUCAAAUAGUUCACGCAUAUUUCAUCAAUUGCAAUGAAUUAUGGAACCAUAAUGGUCAAUUAUUUGAGUUUACUUUCCUAAAACAUUCUUAUGAGGUAAAGUAACUGAAGGCCAGACAGUUGACUAGAUGAGGAUCAUCAUUUUGGUAAGCCAGUAGGAAAAAAAAGGGAAUAUGGUAGCUUCUGACUUUUAGUGGGUACAACCAAAUAAAAGACUUAUGAAUGUAAAAUUGCGAUAAAUUAUGUUAAACACGUAGUUGUUAAAAUUAUACCGUUUAUUACAUAUAAAAAAUAAUUAUGUUUGCAUUCUAAUUUAAAUUUCUUAAUAAUUUUAUUCUCUAAUACAAUCAAAGAAAUAUGUAAGCUAAACACUAUAGAGGACGGUUAUGGUCUCGCGAAUGCUUGACUGCAUAAGCUAGUUUUAGAUGACUGGAAUUCUUUAAAGACUUAACCAAAAUCAUCUGUUAGACCAAUCACCAAACGUACACCCGCAUUGCAUGCACUGUUACUCUGCUAGCUAGGAUGGGCUGGGCCAAGCAAAUCGGGAUGUAAUACUGAUUGCUCCAAAUAAUAUUUUUUUAAAAAUAAUUAAAUAAGAUGCAUGAAACGUUGGCUUUUAAAUUGUCGAUCAGAUAGGCGACCAGAGACCACACAUAGAAGUCAUCGAGGAGCGCGAAACAGACUAUUCAAUUAACUUAUACUCCCUCUGUUUCACAAUAUAAGACUUUCUAGCAUUGUCCACAUAUAUAUAGAUGUUAAUGAAUUUAAACACAUACAUAUGUCUAGAUUCAUUAACAUAUAAAUGAAUGUAGGCAAUGCUAGAAAGUCUUACAUUAUGAAACGGAGGAAGUAAUAAGUAGAGAAAAUAACACGAUUGCUCCUAAUCUAUAUUACCAAUUUUGUUUAAAAUUAUUCUAUGAUUACUCAUCCUAUAAGAAAAGGCUUCUUUUAGCCUUCCAUUGAGAAAGAACACUGCUACACAUACUUAAAAUAGAAUAUUACAAAACUUUUAUAAAUAAUUAAUGAUCUUAACCAUUGAUUUAACUAGAUAAGAGUCAUAAAAAAUCUAGAAGAACUCUCAACACUCUCAACAUGACACGUAUUAGUAAGAGUUUAGUAAGAAAUUUUAGGUUUUGUUUGUCACAACUCUAGAUUUCAAAUCCACCUUGGAUUUUAGUUUGUAUGUUAAAUUAUAGUGGUUUAAAAUUUUAUAUUUCAUCUGAAAUGAAAACAAAACGAUUCAUCCAAAUAUUAUCAAUGUAAUCGUUGAUAAAGUCCAUGGAUUUAUGAAGCCAAGAAUAAUCAGCUCCAAAAAUUUCUGAAUUCGGUGUUGCACCAAAUAAGGUAUGUAAAUCCAUUUUUAUUGACAAAGACUAUGACCAAAAUGUCUGUCAUUAUUAAUAAGAAAAUAGUAUUAAUAUGUUUUUUUGACGGGAAAACAGUAGGAGAGGCUCCUACUGUGAUAUAUUAAAGGAGUUUAUGUACAAGAGUUUAUAUACAGGGGGCUGGAAAUGUUACAAAUUGUCAAGCCAUGAUUUCCAGAGUGGACGUUCAUGCACUUUUAUCCUAUUCAAAAGUAGAAUAAAAUCUUCUCGGAAGCAGAAUUUCCAGAGGUUGAAAGAUGGCUAGAUCGUUUCUGAAGAUAAGAUCGUUUCUUCGCUUCCAAAUGUUUCAAAAAGCUAUAGCAAUGACUUCAAUAAAGAAAGAGUGAGCAAAGUCUCUUUUAGCUGUGGUUACCAUGUUCAUGAAUUCUCGAGUUGUGUGCCAACGGAUAUGAAGGAAUGUCCAACAUUGUACGGCGAAGGAGCAAGUGAAGAACAGGUGACUUACAUUGAAAUUCUUUCUGUGCAUCAAGUCUUUUGUGUUAAGACGAUCCAUCAUGAGGAGCCAUAGGAAAACUUUUAGUUUCAUAGUGCAUUUGCUCUUCCAGAUAAGAGUGAGAGGUAUAUCUGGUGUAAUAUGGGCAAAGAAUAAUGAGUACAUUUUCUUUGCUUGGAAAGAUGGGCAGCUCCAUUUGUAAUGCCAGUUGUCAUCUGAGUUGUUCAAGCUCGUGUUCUGAAGGCUGGACUGCAGUAAAUUCCAAUCUUACAUUGCUUGCGCAGAGAGGUAGGUGGAACAAUUUUUGGAGGGAUUGAUCAUUUAAGAAUCCAAAAACCGAGAUGUCUUCAUUUCUAGAGAAAGAGAACAGGGUGGUGAACCUCUCUGCCAGUGAAUUUCCAGUCCCAUUCCAAUCAUCCUUCCAAAAAACAGUCGUGUCUCCACUAUUGAUUUUAGUUAUUGUGAUCGCUCUGAAUAGGGGGAUAAGUCUGAAAAUGUCCUUCCACCAAAAAGAUCAUUUUUCUGUAUGAGCAUGUGGAGGUAGAUCUGCAUUGAGGUAAUAUUUUCUCCAUAUUAGUUUGACCCAAGGGAGAUUGUGUUUGUUGUAGAAUUUAUCCAGGUGCUUUGUCAAGAGAGCAAUGUUUUGGUAUUCAAGAUCUAUAAUCCCCAGACCACCUUUGUCUUUGGGUUUACAGACUAAGUUCCACGAAGCUAGAGACUGUGACUUUUCAGUGAUAUUUGAUGAUUUCCUCCAUAAGCAGUGCCUUCUUGCCUUGUCAAUGUGUGAUAUAACCUUUUUUGAUAAUCUGAGUGUGCACAUGUAAUAUGUGGGAAAUGAGGAUAGGACCGAAUUAACCAAAGUCAGACGUUGCCCAUAAAUGUGUACUCUGUAUCCUAGUUUGGGUAUUUCUUUUGGUGCUGUGGGUGUUUUCAAUGUUUCAUUGAGCUACACUCUUUUUUGAUUAUUAGACUGUAAUAAUUGGCUAUAGCUCUUUCGAGCAAAGGCCGGGAUAUUUUUUUCCAUUAUCUAAAAAAAAACCAGAGUCAGACGUUGCCCAUAAUUAAGAAAGGUUCCGAUGGGUGACAUUCUUCUUUCCACUCUAUCAAGCAAAGGAGCAUAAUCCACUAUUUCUUGGCUUGGCAUGUCCCAUGGGUAGCCCCAGAUAAGUGAAGGGUAGAGAACCAAUUUGGCAGCCUAAAGUUCCAGCUAGGAUCUGCAAUUUCUCUUCAUGAUCAAUGAUGGGAAUCAUACAUGAUUUAUGAAAGUUGACUUUUAGACCAGCGAUUUGAGCAAAAAGUUGUAGAAGAGCUUUGAGACAGAAGAUUACUAAUCAUCAGUUUCAUGAAUCAAUUUGAAAGAGACACAUACUGGUUUUCAUGGACAAUUUGUAAGAUUACUAAUUGAAGUCUAUUCAGCCAUGAUCUUUGUCACAAAUUUUAGAGAGGAGUUUUGAAGGGCAAUUGGUCUGUAAUCAUUAGCCGACUCUGGAUUUUGCUUUUUCAGAAUGAGGGUGAUGUACUGAUGUUAGAGGUGUUUAGAUUCUGGAUAGAAAUUUGUUCCUCGAAGAAACCCUUGGCUAGGUUAUAGUAAUCCUCUGAAAUAAUAUCCCAACACUUUUGAAGGAAAAGGCCAUUGAAGCCAUCUAUGCUAAGAGCUCUGUCUGUGGGCAUUUUCUUGAUGAUGUUGUCCAUCUCUUCUUUGGAGGGAGGAAGAGAUAGGCUUUCCAAGUUGUCUGUUCUUUGAAUCAGGGUUGAAAGGUCUAUGAAGAUCUCGAGUUCAGCAGAGGUACUCAUUCUUUCUUUGUAGGUGUUGUACAGAAUUGAAGCUUUGUCGACAUGGGAGGUUACUGUGAUGCUGUCAUCUAUGGAAAGAUGAUAUAUUUUGUUUCUUCGGUGACGAUCAGUGGCUGAAGCUUGGAAGAAUUUGAUGUUCUCAUCUCCAAAUUUGACAUAUCGAAUGGUACACCUUUUUUUUCCAGAAUUCGUUUUUGUAUCUCAACAGAUUCAGGAUGUGCAGCUUUAUGAUCUUUCUGAAGUUAAAUUCCUGAAUAAAGAGAGGUCUUUUCUCUUCCAGUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

24

LEP:

4.88%

ME_num:

442

MEP:

89.84%

HE_num:

25

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.68

Avg Expression:

6.01

Tip: OSA-LNC9272619 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-1.209801631164912.66272684331563e-07
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.076763437570293.01874053012169e-07
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.076574220817894.64054589896343e-08
4Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2"-1.179741668678090.000272374358807285
5Nipponbare // leaf // control--/--Nipponbare // leaf // drought-1.179818906675450.00028482298807315
6Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1"-1.179915574698320.000273422127851404
7Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.229327916406690.00116196105157205