Chr:
Chr9
Start:
4492824
End:
4498215
Strand:
-
Ref_name:
LOC9272619
Sequence
(XR_001548589.2):
UUUGUCAGGCCUCCGCACGCUCCUCCGGUGAGGCCGAGGCAUCUGCCGACUCCUCCAGCGCAAGCGCCGCACCUCCCUGUUGCUUCUCUACCGCCGCCUCCUCCUCUCCCUCCCUAUAGUCCCUUCGUGAGCGCCACCUCGCCCAGCCCGCAUCGCGACUCUGCCGGGACAACGCGCUCCGCCCCCAAAUUCCACGCGCCGCCGAAUUCCAUGCGCUGCCGCACCGAAUCCGAAGACGGCCGCCCUCUUUUCCCCAUCCUGAAGCCUAGCCGCAUGCUGCCUUUGCUCGCUGCCGUCGUGCCGCAGCGCUGCCUGGUUCUUCAUGAGAGAGAGAGAGAGAGCGAGAGAGGAGGGAGGGAGGGAGGGAGAGGAGAGGUGCUCCUCCUUGGCGGCUCCCAUUCCGUUUCGACAGCGCCGGAGCCUCCCUCAUAGAUGAAAAUUCACCUUAAAAUUAUUGGAUUGUUGGAUUCUAUUUUUAUCUAUCUAUUUGCAUAUAUGAAAAUUGUAUGUCGUAUGCAUAUCAUAAAUCCACAUUACUGGUUAACCUAUUCAUAAGCCCAAAAAUAAUAAUGAUUUCUUGCAACUGUGCUUUUGUAAUAAUAAUCCUUUCCCAAAUGCAGAUGAGCAAUGAAUAAGAAUUUGGGUCAAUCAAUUGCACACCUCAAAGAAGUUUUAAGGAGCUAGAAAGGAUAAUGAGGUUUUGGAGCCUCAUUGCCAUUUCUAACCCAGGUGCACAAACUGUAAAGACUAGGCAAGACUUGUGGCUAACAGGGCAAUGAGAACCUGGAAGAAGGGGGCUGGAAAUGUUACAAAUUGUCAAGCCAUGAUUUCCAGAGUGGACGUUCAUGCACUUUUAUCCUAUUCAAAAGUAGAAUAAAAUCUUCUCGGAAGCAGAAUUUCCAGAGGUUGAAAGAUGGCUAGAUCGUUUCUGAAGAUAAGAUCGUUUCUUCGCUUCCAAAUGUUUCAAAAAGCUAUAGCAAUGACUUCAAUAAAGAAAGAGUGAGCAAAGUCUCUUUUAGCUGUGGUUACCAUGUUCAUGAAUUCUCGAGUUGUGUGCCAACGGAUAUGAAGGAAUGUCCAACAUUGUACGGCGAAGGAGCAAGUGAAGAACAGGUGACUUACAUUGAAAUUCUUUCUGUGCAUCAAGUCUUUUGUGUUAAGACGAUCCAUCAUGAGGAGCCAUAGGAAAACUUUUAGUUUCAUAGUGCAUUUGCUCUUCCAGAUAAGAGUGAGAGGUAUAUCUGGUGUAAUAUGGGCAAAGAAUAAUGAGUACAUUUUCUUUGCUUGGAAAGAUGGGCAGCUCCAUUUGUAAUGCCAGUUGUCAUCUGAGUUGUUCAAGCUCGUGUUCUGAAGGCUGGACUGCAGUAAAUUCCAAUCUUACAUUGCUUGCGCAGAGAGGUAGGUGGAACAAUUUUUGGAGGGAUUGAUCAUUUAAGAAUCCAAAAACCGAGAUGUCUUCAUUUCUAGAGAAAGAGAACAGGGUGGUGAACCUCUCUGCCAGUGAAUUUCCAGUCCCAUUCCAAUCAUCCUUCCAAAAAACAGUCGUGUCUCCACUAUUGAUUUUAGUUAUUGUGAUCGCUCUGAAUAGGGGGAUAAGUCUGAAAAUGUCCUUCCACCAAAAAGAUCAUUUUUCUGUAUGAGCAUGUGGAGGUAGAUCUGCAUUGAGGUAAUAUUUUCUCCAUAUUAGUUUGACCCAAGGGAGAUUGUGUUUGUUGUAGAAUUUAUCCAGGUGCUUUGUCAAGAGAGCAAUGUUUUGGUAUUCAAGAUCUAUAAUCCCCAGACCACCUUUGUCUUUGGGUUUACAGACUAAGUUCCACGAAGCUAGAGACUGUGACUUUUCAGUGAUAUUUGAUGAUUUCCUCCAUAAGCAGUGCCUUCUUGCCUUGUCAAUGUGUGAUAUAACCUUUUUUGAUAAUCUGAGUGUGCACAUGUAAUAUGUGGGAAAUGAGGAUAGGACCGAAUUAACCAAAGUCAGACGUUGCCCAUAAAUGUGUACUCUGUAUCCUAGUUUGGGUAUUUCUUUUGGUGCUGUGGGUGUUUUCAAUGUUUCAUUGAGCUACACUCUUUUUUGAUUAUUAGACUGUAAUAAUUGGCUAUAGCUCUUUCGAGCAAAGGCCGGGAUAUUUUUUUCCAUUAUCUAAAAAAAAACCAGAGUCAGACGUUGCCCAUAAUUAAGAAAGGUUCCGAUGGGUGACAUUCUUCUUUCCACUCUAUCAAGCAAAGGAGCAUAAUCCACUAUUUCUUGGCUUGGCAUGUCCCAUGGGUAGCCCCAGAUAAGUGAAGGGUAGAGAACCAAUUUGGCAGCCUAAAGUUCCAGCUAGGAUCUGCAAUUUCUCUUCAUGAUCAAUGAUGGGAAUCAUACAUGAUUUAUGAAAGUUGACUUUUAGACCAGCGAUUUGAGCAAAAAGUUGUAGAAGAGCUUUGAGACAGAAGAUUACUAAUCAUCAGUUUCAUGAAUCAAUUUGAAAGAGACACAUACUGGUUUUCAUGGACAAUUUGUAAGAUUACUAAUUGAAGUCUAUUCAGCCAUGAUCUUUGUCACAAAUUUUAGAGAGGAGUUUUGAAGGGCAAUUGGUCUGUAAUCAUUAGCCGACUCUGGAUUUUGCUUUUUCAGAAUGAGGGUGAUGUACUGAUGUUAGAGGUGUUUAGAUUCUGGAUAGAAAUUUGUUCCUCGAAGAAACCCUUGGCUAGGUUAUAGUAAUCCUCUGAAAUAAUAUCCCAACACUUUUGAAGGAAAAGGCCAUUGAAGCCAUCUAUGCUAAGAGCUCUGUCUGUGGGCAUUUUCUUGAUGAUGUUGUCCAUCUCUUCUUUGGAGGGAGGAAGAGAUAGGCUUUCCAAGUUGUCUGUUCUUUGAAUCAGGGUUGAAAGGUCUAUGAAGAUCUCGAGUUCAGCAGAGGUACUCAUUCUUUCUUUGUAGGUGUUGUACAGAAUUGAAGCUUUGUCGACAUGGGAGGUUACUGUGAUGCUGUCAUCUAUGGAAAGAUGAUAUAUUUUGUUUCUUCGGUGACGAUCAGUGGCUGAAGCUUGGAAGAAUUUGAUGUUCUCAUCUCCAAAUUUGACAUAUCGAAUGGUACACCUUUUUUUUCCAGAAUUCGUUUUUGUAUCUCAACAGAUUCAGGAUGUGCAGCUUUAUGAUCUUUCUGAAGUUAAAUUCCUGAAUAAAGAGAGGUCUUUUCUCUUCCAGUA
Sequence
(XR_003238671.1):
UUUGUCAGGCCUCCGCACGCUCCUCCGGUGAGGCCGAGGCAUCUGCCGACUCCUCCAGCGCAAGCGCCGCACCUCCCUGUUGCUUCUCUACCGCCGCCUCCUCCUCUCCCUCCCUAUAGUCCCUUCGUGAGCGCCACCUCGCCCAGCCCGCAUCGCGACUCUGCCGGGACAACGCGCUCCGCCCCCAAAUUCCACGCGCCGCCGAAUUCCAUGCGCUGCCGCACCGAAUCCGAAGACGGCCGCCCUCUUUUCCCCAUCCUGAAGCCUAGCCGCAUGCUGCCUUUGCUCGCUGCCGUCGUGCCGCAGCGCUGCCUGGUUCUUCAUGAGAGAGAGAGAGAGAGCGAGAGAGGAGGGAGGGAGGGAGGGAGAGGAGAGGUGCUCCUCCUUGGCGGCUCCCAUUCCGUUUCGACAGCGCCGGAGCCUCCCUCAUAGAUGAAAAUUCACCUUAAAAUUAUUGGAUUGUUGGAUUCUAUUUUUAUCUAUCUAUUUGCAUAUAUGAAAAUUGUAUGUCGUAUGCAUAUCAUAAAUCCACAUUACUGGUUAACCUAUUCAUAAGCCCAAAAAUAAUAAUGAUUUCUUGCAACUGUGCUUUUGUAAUAAUAAUCCUUUCCCAAAUGCAGAUGAGCAAUGAAUAAGAAUUUGGGUCAAUCAAUUGCACACCUCAAAGAAGUUUUAAGGAGCUAGAAAGGAUAAUGAGGUUUUGGAGCCUCAUUGCCAUUUCUAACCCAGGUGCACAAACUGUAAAGACUAGGCAAGACUUGUGGCUAACAGGGCAAUGAGAACCUGGAAGAAGGUAGUUCUACAAUGUUAUUCAAUUGUGAAUGGACUUAAUAAAUACUAAAUAUCAAACUUAUCCUGCUCUAAGUAGUGAUUUAGUAUAUAUGAUGUUAAUCAUGCAUUGCAGCCUGCUUAGAAAGCAUACGGAUUUUAGGAUUCGAGAGUGAGAUAGACCAUGGAAAAUAUAAGCAUAGAAAGCAUAUAUGAGAACUGAUAUACAACCAUUUUUAAUCAUAAGCCACUACUACUGCUUUUUAGACAGUUUUGUGAUGAUGAUACAUUGGCACUUUAUUAAAGAAUUAUAGUAAUUUCAUAAUAUUACGAAAAAUAGUGGAUAGAUUUACAAUGCCAAAAUCAGACGCCCAUACCUAAUUCUAACCACAAAAAUAUUUUAUUGGAGUUUUCAGAAUUCAAAGCCAAUAGGGUGCUUCCAAAUGUUCAAUCAUGUCAGUUUUUCCCAGAAGGGCCUUAUUGUUAAUCAUAUUGUUCAUGAACUUUUCAAAAUGCUGAAAUUAGAUUAAGAAUCACAUCUUGCUAAUAAAAGCAAGAUUAGAGAAAUAUAAAACAACUUGAUCAUAUUUUUCUUAUCACUAGGUUAUAAUAUUUCACACACUAACUCUUUCAAAUAGUUCACGCAUAUUUCAUCAAUUGCAAUGAAUUAUGGAACCAUAAUGGUCAAUUAUUUGAGUUUACUUUCCUAAAACAUUCUUAUGAGGUAAAGUAACUGAAGGCCAGACAGUUGACUAGAUGAGGAUCAUCAUUUUGGUAAGCCAGUAGGAAAAAAAAGGGAAUAUGGUAGCUUCUGACUUUUAGUGGGUACAACCAAAUAAAAGACUUAUGAAUGUAAAAUUGCGAUAAAUUAUGUUAAACACGUAGUUGUUAAAAUUAUACCGUUUAUUACAUAUAAAAAAUAAUUAUGUUUGCAUUCUAAUUUAAAUUUCUUAAUAAUUUUAUUCUCUAAUACAAUCAAAGAAAUAUGUAAGCUAAACACUAUAGAGGACGGUUAUGGUCUCGCGAAUGCUUGACUGCAUAAGCUAGUUUUAGAUGACUGGAAUUCUUUAAAGACUUAACCAAAAUCAUCUGUUAGACCAAUCACCAAACGUACACCCGCAUUGCAUGCACUGUUACUCUGCUAGCUAGGAUGGGCUGGGCCAAGCAAAUCGGGAUGUAAUACUGAUUGCUCCAAAUAAUAUUUUUUUAAAAAUAAUUAAAUAAGAUGCAUGAAACGUUGGCUUUUAAAUUGUCGAUCAGAUAGGCGACCAGAGACCACACAUAGAAGUCAUCGAGGAGCGCGAAACAGACUAUUCAAUUAACUUAUACUCCCUCUGUUUCACAAUAUAAGACUUUCUAGCAUUGUCCACAUAUAUAUAGAUGUUAAUGAAUUUAAACACAUACAUAUGUCUAGAUUCAUUAACAUAUAAAUGAAUGUAGGCAAUGCUAGAAAGUCUUACAUUAUGAAACGGAGGAAGUAAUAAGUAGAGAAAAUAACACGAUUGCUCCUAAUCUAUAUUACCAAUUUUGUUUAAAAUUAUUCUAUGAUUACUCAUCCUAUAAGAAAAGGCUUCUUUUAGCCUUCCAUUGAGAAAGAACACUGCUACACAUACUUAAAAUAGAAUAUUACAAAACUUUUAUAAAUAAUUAAUGAUCUUAACCAUUGAUUUAACUAGAUAAGAGUCAUAAAAAAUCUAGAAGAACUCUCAACACUCUCAACAUGACACGUAUUAGUAAGAGUUUAGUAAGAAAUUUUAGGUUUUGUUUGUCACAACUCUAGAUUUCAAAUCCACCUUGGAUUUUAGUUUGUAUGUUAAAUUAUAGUGGUUUAAAAUUUUAUAUUUCAUCUGAAAUGAAAACAAAACGAUUCAUCCAAAUAUUAUCAAUGUAAUCGUUGAUAAAGUCCAUGGAUUUAUGAAGCCAAGAAUAAUCAGCUCCAAAAAUUUCUGAAUUCGGUGUUGCACCAAAUAAGGUAUGUAAAUCCAUUUUUAUUGACAAAGACUAUGACCAAAAUGUCUGUCAUUAUUAAUAAGAAAAUAGUAUUAAUAUGUUUUUUUGACGGGAAAACAGUAGGAGAGGCUCCUACUGUGAUAUAUUAAAGGAGUUUAUGUACAAGAGUUUAUAUACAGGGGGCUGGAAAUGUUACAAAUUGUCAAGCCAUGAUUUCCAGAGUGGACGUUCAUGCACUUUUAUCCUAUUCAAAAGUAGAAUAAAAUCUUCUCGGAAGCAGAAUUUCCAGAGGUUGAAAGAUGGCUAGAUCGUUUCUGAAGAUAAGAUCGUUUCUUCGCUUCCAAAUGUUUCAAAAAGCUAUAGCAAUGACUUCAAUAAAGAAAGAGUGAGCAAAGUCUCUUUUAGCUGUGGUUACCAUGUUCAUGAAUUCUCGAGUUGUGUGCCAACGGAUAUGAAGGAAUGUCCAACAUUGUACGGCGAAGGAGCAAGUGAAGAACAGGUGACUUACAUUGAAAUUCUUUCUGUGCAUCAAGUCUUUUGUGUUAAGACGAUCCAUCAUGAGGAGCCAUAGGAAAACUUUUAGUUUCAUAGUGCAUUUGCUCUUCCAGAUAAGAGUGAGAGGUAUAUCUGGUGUAAUAUGGGCAAAGAAUAAUGAGUACAUUUUCUUUGCUUGGAAAGAUGGGCAGCUCCAUUUGUAAUGCCAGUUGUCAUCUGAGUUGUUCAAGCUCGUGUUCUGAAGGCUGGACUGCAGUAAAUUCCAAUCUUACAUUGCUUGCGCAGAGAGGUAGGUGGAACAAUUUUUGGAGGGAUUGAUCAUUUAAGAAUCCAAAAACCGAGAUGUCUUCAUUUCUAGAGAAAGAGAACAGGGUGGUGAACCUCUCUGCCAGUGAAUUUCCAGUCCCAUUCCAAUCAUCCUUCCAAAAAACAGUCGUGUCUCCACUAUUGAUUUUAGUUAUUGUGAUCGCUCUGAAUAGGGGGAUAAGUCUGAAAAUGUCCUUCCACCAAAAAGAUCAUUUUUCUGUAUGAGCAUGUGGAGGUAGAUCUGCAUUGAGGUAAUAUUUUCUCCAUAUUAGUUUGACCCAAGGGAGAUUGUGUUUGUUGUAGAAUUUAUCCAGGUGCUUUGUCAAGAGAGCAAUGUUUUGGUAUUCAAGAUCUAUAAUCCCCAGACCACCUUUGUCUUUGGGUUUACAGACUAAGUUCCACGAAGCUAGAGACUGUGACUUUUCAGUGAUAUUUGAUGAUUUCCUCCAUAAGCAGUGCCUUCUUGCCUUGUCAAUGUGUGAUAUAACCUUUUUUGAUAAUCUGAGUGUGCACAUGUAAUAUGUGGGAAAUGAGGAUAGGACCGAAUUAACCAAAGUCAGACGUUGCCCAUAAAUGUGUACUCUGUAUCCUAGUUUGGGUAUUUCUUUUGGUGCUGUGGGUGUUUUCAAUGUUUCAUUGAGCUACACUCUUUUUUGAUUAUUAGACUGUAAUAAUUGGCUAUAGCUCUUUCGAGCAAAGGCCGGGAUAUUUUUUUCCAUUAUCUAAAAAAAAACCAGAGUCAGACGUUGCCCAUAAUUAAGAAAGGUUCCGAUGGGUGACAUUCUUCUUUCCACUCUAUCAAGCAAAGGAGCAUAAUCCACUAUUUCUUGGCUUGGCAUGUCCCAUGGGUAGCCCCAGAUAAGUGAAGGGUAGAGAACCAAUUUGGCAGCCUAAAGUUCCAGCUAGGAUCUGCAAUUUCUCUUCAUGAUCAAUGAUGGGAAUCAUACAUGAUUUAUGAAAGUUGACUUUUAGACCAGCGAUUUGAGCAAAAAGUUGUAGAAGAGCUUUGAGACAGAAGAUUACUAAUCAUCAGUUUCAUGAAUCAAUUUGAAAGAGACACAUACUGGUUUUCAUGGACAAUUUGUAAGAUUACUAAUUGAAGUCUAUUCAGCCAUGAUCUUUGUCACAAAUUUUAGAGAGGAGUUUUGAAGGGCAAUUGGUCUGUAAUCAUUAGCCGACUCUGGAUUUUGCUUUUUCAGAAUGAGGGUGAUGUACUGAUGUUAGAGGUGUUUAGAUUCUGGAUAGAAAUUUGUUCCUCGAAGAAACCCUUGGCUAGGUUAUAGUAAUCCUCUGAAAUAAUAUCCCAACACUUUUGAAGGAAAAGGCCAUUGAAGCCAUCUAUGCUAAGAGCUCUGUCUGUGGGCAUUUUCUUGAUGAUGUUGUCCAUCUCUUCUUUGGAGGGAGGAAGAGAUAGGCUUUCCAAGUUGUCUGUUCUUUGAAUCAGGGUUGAAAGGUCUAUGAAGAUCUCGAGUUCAGCAGAGGUACUCAUUCUUUCUUUGUAGGUGUUGUACAGAAUUGAAGCUUUGUCGACAUGGGAGGUUACUGUGAUGCUGUCAUCUAUGGAAAGAUGAUAUAUUUUGUUUCUUCGGUGACGAUCAGUGGCUGAAGCUUGGAAGAAUUUGAUGUUCUCAUCUCCAAAUUUGACAUAUCGAAUGGUACACCUUUUUUUUCCAGAAUUCGUUUUUGUAUCUCAACAGAUUCAGGAUGUGCAGCUUUAUGAUCUUUCUGAAGUUAAAUUCCUGAAUAAAGAGAGGUCUUUUCUCUUCCAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
89.84%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.68
Avg Expression:
6.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.20980163116491 | 2.66272684331563e-07 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.07676343757029 | 3.01874053012169e-07 |
3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.07657422081789 | 4.64054589896343e-08 |
4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.17974166867809 | 0.000272374358807285 |
5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.17981890667545 | 0.00028482298807315 |
6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.17991557469832 | 0.000273422127851404 |
7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.22932791640669 | 0.00116196105157205 |