Chr:
Chr8
Start:
13103453
End:
13106723
Strand:
+
Ref_name:
LOC9272596
Sequence
(XR_001548495.2):
UCCCACGUCACCAUUUCGCUCGCCUCCCUCGAGUCGCUCGGUCUCAUGGCGCCCAAUCUCGAUGGCGGCGGGUAGUGUUAGCCACCGCCGCGCACUCUCCACCUUCAGCUCGCACCUCCACCUCCCUCCCCCCUCCCCAACCACCCGUGUUGCCUCUCCCUCUUCACCAGGCCAUCGCCGCCGGGCAUGCGCACGGGUGCAAGGCGAUGGUAGAGGCGCUUCACCCGUGUGUGUUCACGCCGGCGGCAGCCGUAUUGGCUCCCAACCUGGGACCAAGGGAAAUUGAUGGAGAAUGCCAAGGAUUUAGGGUAUUUAGGGUUUUCUCCAUCGAGAUUGCUAUCCUAAUUGCAUUUUGGUAUUUUGCUUAGAGUUCUUUCUCCUCUCAUCUAUUUUUUGUUGGCUGCAUUCCUUCUACAAUGGUGCGUGCUCAUCUCGAGCUAUUUAAGCGAUUUCCAAUUUGUUGAUCUGUUCGUUUUGGGGACUUAAAGAUUACUGAUCCUACCGUUGCUUGCAGACCGACACCUAAAUUAAAUAGUUGAUAGAUUAAAUCUAUUUGGAUGUUAUCCCAGGCUUCAUGGACAACAACGUCGCCUCGAGGAAAUAAGCCUCCUCCGUCCCUCCAUAUGUAUUUCCUCCUCUGCACUGUACUGCUUUGCUUUUCCUCAUGCUUGCUGUGAUGUGGAUGUGUUGCUGCUGACCAAUACUAUCUUAUUAUUGCAGUUUUCUUUUUUUGUUCAUGCCGUUGCAUUGCCUCUGAAUCUUACUUUUUUUGCGGGGCCUCUGAAUCUUACUUACUUUUCAGUGCUAUAUGCAGAUUCAGUUACAGGACACAUAGUCCCUGGAGAUGAAACAAGGGAAAAUAGACUGCACCAAGCAUAAGUUAAUGUACAUUCAGCAUAAGAGAGUUAAGGCCACUACCUAGCUAGAGAAACCGAAGGUGGGGCUCUUUGUUGCCAACAUAAGACCAACAAAAUUUGGAUGACUGCUUUCGAUUUUGGUGCAGUAGUUUUGGUUAGCGACCAUUGUAUCAUGUUUUCUUACAGUAAAGUCCCACAUUAGUAGGUGGAUAGGUGCUUCCGCGAGGGCUGUGAAUGUUCUUUACUUCUGAUUAAAGUGAAGUGGUAUAUUUGUGUAGGUGAUGACAAAAGCUACAAUUAUUCAGCGCCGUCAUUCUCUCCUGCAGGUGAUGUAUUAUGCAGUUAACUGUUCGCUGUAAUUUUACAGUGUCACUGCUCCCACUCUGCUUUUGAAAACAAUAUGUCAAUAAUGGAUUACAUAAGGAAAUGUUUAUUGCAUCUGUCAGUUAACAUUACUUAUGGUGUUAGGGACCUUUUGAUUCAUAGGAGUGGCAAAGAAUUUUAUAGGAUUCAAAUUCCAACGGAUUUUUCUUCCUAUGUUUCCCUUUGACUUACAGGAUUAUGUUCCUAUGCUUCACUUUUAUAGGAAAAAUACUAAGUGGUAUAACCUCUUUGUAAAUUUUCCUUUGUUUUUCCUAUGGCACUAUCAAAGGGCUCCUAUUAUCUUUUCCUAUGUUUUUUAUUCCUGUAGGAUUAAAGAAGCACAUCACUUUUAUUCCUGGGUUUUUCCUAUUUGUGUGCUUUGAUCAAAGGGGCUUUAAGAUGCUAUGCAGCUAUGCCAUAAGCCACCCUUCCUUGUGUUAUGACCUACUACUUCCUACUAGUAGUACAUUUUUGGUAUCGCUAUGCCAUAAGCCACCCUUCCUUGUGUUAUGACCUACUACUUCCUACUAGUAGUACAUUUUUGGUAUCCAUAUGGAUAUUUUCUUCAUGAUGGUUGUCUCUACUUAAAGCUAUGCAUUAUUCAGACAUGAAGAUUAAGUGAAAAACAAGCCACUCCCAACUUAACUUUUGUUUGAUGGAUAUGCUAGAUAGAAACCUAGGUGUAUUUUCUUGGUCUCUUAGGUCGUUGUGUCACACAAUGUUGUUUGUUGAUGAGCUCCCUAUAUAUAUUGUUAGGUCAAUUAUGUUACACAACAAGUUUUUUUGCGCUAAUGUGAGAUUACUAGGCUGACAGUCCUUAGAUAUAGAUUUGGUUUGGUUAUGGUGACAGUUUGGUUUUGGAUGAUUGGACUUUGUUUUAUUUUUCCACAAGCCCAGCAAUAUGAUAUUAAGUAAUGUUAUUUAAUAUGCGAAGAUUAGUGGCCAUUCCGAAACGCAUGCCGAAACGACAUAUUUUCCAAAACUGAAUUGUCCUCCUAUGAGUUACAUUCAAUUUCUCUUCCUUAAACGUGGGGUUUUAUGUGUGCUCAGUGACUACCCCCAUAGCAUACUUGCUGAUCCAUAUGUAUCGUUGCUAAACAGUACUAUGUAUAGUGGUUUAAUUUUAAUGGUCGUAAAUCUUGGUUUCCCAGUAAGUAGCUAGCUAGCAUGAUUUUGUCCCUUUUUUUGUUUCAAUCAUAGUUUACUCUUUUAACGGGCAACUUGUUUAUAAACAAACAACUCACGGGGUGUUGGUCUUAUGUCAUUCUAGAGUACUUUUCGGAGUUUAAUAAUAUGACACAAAGGCUUUCCAAACGAUGGCGAUGCCUAUGGAUAAUCAUUUUCCUGCUGCUCUUACAUAUUUCUAUAUAUUAUAUAUUCUUUUAUUUACUUAUUUAUUUUGACUGAGAAGAGCCGGAGACUGCGCUAUAUUUCAAUAUAUAUAUUCUUCUUUUAUGUUUAAUCCAUUUAGUUUGAUGCUCCCACUCUUCAGUCGGUGCUGCUUUAUAAUGAAAUUAUUAUGUGCAUUAUAUCGUCCAACAUAAGCAUAACCAUUUCAUGUUUGCAGGACCAAAGCGCCAUUCAUACUGCUGUGCUUUUGUUGUGGAUUGAACUAGCAGGAGAGAAGAAUGCACAUGAACUUAUAAAUGGAACAUUUCCUGUAGCCACCAGUUUGAUCUCACUAGAAAAAGGCAGCUACUUUAUUUGUCCUAUAUAUUAGUGUAUUGUUUUUUAAUCAAUGUAAAUGAUCACUUACGGAGUACAUGUAUGCAUUAAUCACCUAAUCGUCCUGUAAUAUUUUCUGUUUAAUUUUUUCCCUGCACGGCGUAGCGCGCAAACCUUUUCUAGUAUAUAUAACAUCAUCAGGAUUUUAUA
Sequence
(XR_001548496.2):
UCCCACGUCACCAUUUCGCUCGCCUCCCUCGAGUCGCUCGGUCUCAUGGCGCCCAAUCUCGAUGGCGGCGGGUAGUGUUAGCCACCGCCGCGCACUCUCCACCUUCAGCUCGCACCUCCACCUCCCUCCCCCCUCCCCAACCACCCGUGUUGCCUCUCCCUCUUCACCAGGCCAUCGCCGCCGGGCAUGCGCACGGGUGCAAGGCGAUGGUAGAGGCGCUUCACCCGUGUGUGUUCACGCCGGCGGCAGCCGUAUUGGCUCCCAACCUGGGACCAAGGGAAAUUGAUGGAGAAUGCCAAGGAUUUAGGGUAUUUAGGGUUUUCUCCAUCGAGAUUGCUAUCCUAAUUGCAUUUUGGUAUUUUGCUUAGAGUUCUUUCUCCUCUCAUCUAUUUUUUGUUGGCUGCAUUCCUUCUACAAUGGUGCGUGCUCAUCUCGAGCUAUUUAAGCGAUUUCCAAUUUGUUGAUCUGUUCGUUUUGGGGACUUAAAGAUUACUGAUCCUACCGUUGCUUGCAGACCGACACCUAAAUUAAAUAGUUGAUAGAUUAAAUCUAUUUGGAUGUUAUCCCAGGCUUCAUGGACAACAACGUCGCCUCGAGGAAAUAAGCCUCCUCCGUCCCUCCAUAUGUAUUUCCUCCUCUGCACUGUACUGCUUUGCUUUUCCUCAUGCUUGCUGUGAUGUGGAUGUGUUGCUGCUGACCAAUACUAUCUUAUUAUUGCAGUUUUCUUUUUUUGUUCAUGCCGUUGCAUUGCCUCUGAAUCUUACUUUUUUUGCGGGGCCUCUGAAUCUUACUUACUUUUCAGUGCUAUAUGCAGAUUCAGUUACAGGACACAUAGUCCCUGGAGAUGAAACAAGGGAAAAUAGACUGCACCAAGCAUAAGUUAAUGUACAUUCAGCAUAAGAGAGUUAAGGCCACUACCUAGCUAGAGAAACCGAAGGUGAUGACAAAAGCUACAAUUAUUCAGCGCCGUCAUUCUCUCCUGCAGGUGAUGUAUUAUGCAGUUAACUGUUCGCUGUAAUUUUACAGUGUCACUGCUCCCACUCUGCUUUUGAAAACAAUAUGUCAAUAAUGGAUUACAUAAGGAAAUGUUUAUUGCAUCUGUCAGUUAACAUUACUUAUGGUGUUAGGGACCUUUUGAUUCAUAGGAGUGGCAAAGAAUUUUAUAGGAUUCAAAUUCCAACGGAUUUUUCUUCCUAUGUUUCCCUUUGACUUACAGGAUUAUGUUCCUAUGCUUCACUUUUAUAGGAAAAAUACUAAGUGGUAUAACCUCUUUGUAAAUUUUCCUUUGUUUUUCCUAUGGCACUAUCAAAGGGCUCCUAUUAUCUUUUCCUAUGUUUUUUAUUCCUGUAGGAUUAAAGAAGCACAUCACUUUUAUUCCUGGGUUUUUCCUAUUUGUGUGCUUUGAUCAAAGGGGCUUUAAGAUGCUAUGCAGCUAUGCCAUAAGCCACCCUUCCUUGUGUUAUGACCUACUACUUCCUACUAGUAGUACAUUUUUGGUAUCGCUAUGCCAUAAGCCACCCUUCCUUGUGUUAUGACCUACUACUUCCUACUAGUAGUACAUUUUUGGUAUCCAUAUGGAUAUUUUCUUCAUGAUGGUUGUCUCUACUUAAAGCUAUGCAUUAUUCAGACAUGAAGAUUAAGUGAAAAACAAGCCACUCCCAACUUAACUUUUGUUUGAUGGAUAUGCUAGAUAGAAACCUAGGUGUAUUUUCUUGGUCUCUUAGGUCGUUGUGUCACACAAUGUUGUUUGUUGAUGAGCUCCCUAUAUAUAUUGUUAGGUCAAUUAUGUUACACAACAAGUUUUUUUGCGCUAAUGUGAGAUUACUAGGCUGACAGUCCUUAGAUAUAGAUUUGGUUUGGUUAUGGUGACAGUUUGGUUUUGGAUGAUUGGACUUUGUUUUAUUUUUCCACAAGCCCAGCAAUAUGAUAUUAAGUAAUGUUAUUUAAUAUGCGAAGAUUAGUGGCCAUUCCGAAACGCAUGCCGAAACGACAUAUUUUCCAAAACUGAAUUGUCCUCCUAUGAGUUACAUUCAAUUUCUCUUCCUUAAACGUGGGGUUUUAUGUGUGCUCAGUGACUACCCCCAUAGCAUACUUGCUGAUCCAUAUGUAUCGUUGCUAAACAGUACUAUGUAUAGUGGUUUAAUUUUAAUGGUCGUAAAUCUUGGUUUCCCAGUAAGUAGCUAGCUAGCAUGAUUUUGUCCCUUUUUUUGUUUCAAUCAUAGUUUACUCUUUUAACGGGCAACUUGUUUAUAAACAAACAACUCACGGGGUGUUGGUCUUAUGUCAUUCUAGAGUACUUUUCGGAGUUUAAUAAUAUGACACAAAGGCUUUCCAAACGAUGGCGAUGCCUAUGGAUAAUCAUUUUCCUGCUGCUCUUACAUAUUUCUAUAUAUUAUAUAUUCUUUUAUUUACUUAUUUAUUUUGACUGAGAAGAGCCGGAGACUGCGCUAUAUUUCAAUAUAUAUAUUCUUCUUUUAUGUUUAAUCCAUUUAGUUUGAUGCUCCCACUCUUCAGUCGGUGCUGCUUUAUAAUGAAAUUAUUAUGUGCAUUAUAUCGUCCAACAUAAGCAUAACCAUUUCAUGUUUGCAGGACCAAAGCGCCAUUCAUACUGCUGUGCUUUUGUUGUGGAUUGAACUAGCAGGAGAGAAGAAUGCACAUGAACUUAUAAAUGGAACAUUUCCUGUAGCCACCAGUUUGAUCUCACUAGAAAAAGGCAGCUACUUUAUUUGUCCUAUAUAUUAGUGUAUUGUUUUUUAAUCAAUGUAAAUGAUCACUUACGGAGUACAUGUAUGCAUUAAUCACCUAAUCGUCCUGUAAUAUUUUCUGUUUAAUUUUUUCCCUGCACGGCGUAGCGCGCAAACCUUUUCUAGUAUAUAUAACAUCAUCAGGAUUUUAUA
Sequence
(XR_001548497.2):
UCCCACGUCACCAUUUCGCUCGCCUCCCUCGAGUCGCUCGGUCUCAUGGCGCCCAAUCUCGAUGGCGGCGGGUAGUGUUAGCCACCGCCGCGCACUCUCCACCUUCAGCUCGCACCUCCACCUCCCUCCCCCCUCCCCAACCACCCGUGUUGCCUCUCCCUCUUCACCAGGCCAUCGCCGCCGGGCAUGCGCACGGGUGCAAGGCGAUGGUAGAGGCGCUUCACCCGUGUGUGUUCACGCCGGCGGCAGCCGUAUUGGCUCCCAACCUGGGACCAAGGGAAAUUGAUGGAGAAUGCCAAGGAUUUAGGGUAUUUAGGGUUUUCUCCAUCGAGAUUGCUAUCCUAAUUGCAUUUUGGUAUUUUGCUUAGAGUUCUUUCUCCUCUCAUCUAUUUUUUGUUGGCUGCAUUCCUUCUACAAUGGUGCGUGCUCAUCUCGAGCUAUUUAAGCGAUUUCCAAUUUGUUGAUCUGUUCGUUUUGGGGACUUAAAGAUUACUGAUCCUACCGUUGCUUGCAGACCGACACCUAAAUUAAAUAGUUGAUAGAUUAAAUCUAUUUGGAUGUUAUCCCAGGCUUCAUGGACAACAACGUCGCCUCGAGGAAAUAAGCCUCCUCCGUCCCUCCAUAUGUAUUUCCUCCUCUGCACUGUACUGCUUUGCUUUUCCUCAUGCUUGCUGUGAUGUGGAUGUGUUGCUGCUGACCAAUACUAUCUUAUUAUUGCAGUUUUCUUUUUUUGUUCAUGCCGUUGCAUUGCCUCUGAAUCUUACUUUUUUUGCGGGGCCUCUGAAUCUUACUUACUUUUCAGUGCUAUAUGCAGAUUCAGUUACAGGACACAUAGUCCCUGGAGAUGAAACAAGGGAAAAUAGACUGCACCAAGCAUAAGUUAAUGUACAUUCAGCAUAAGAGAGUUAAGGCCACUACCUAGCUAGAGAAACCGAAGGUGAUGACAAAAGCUACAAUUAUUCAGCGCCGUCAUUCUCUCCUGCAGGACCAAAGCGCCAUUCAUACUGCUGUGCUUUUGUUGUGGAUUGAACUAGCAGGAGAGAAGAAUGCACAUGAACUUAUAAAUGGAACAUUUCCUGUAGCCACCAGUUUGAUCUCACUAGAAAAAGGCAGCUACUUUAUUUGUCCUAUAUAUUAGUGUAUUGUUUUUUAAUCAAUGUAAAUGAUCACUUACGGAGUACAUGUAUGCAUUAAUCACCUAAUCGUCCUGUAAUAUUUUCUGUUUAAUUUUUUCCCUGCACGGCGUAGCGCGCAAACCUUUUCUAGUAUAUAUAACAUCAUCAGGAUUUUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.15%
ME_num:
MEP:
22.76%
HE_num:
HEP:
54.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.53
Avg Expression:
12.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -8.94947582590643 | 9.81059194787249e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.93170634764893 | 2.18625886939055e-31 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.38412683825689 | 6.16115710776933e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.36271575150827 | 1.30246077678302e-13 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.04887277893103 | 0.000878987393987197 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.15101081827772 | 2.5376835080473e-39 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.32390438026131 | 3.70684971615033e-09 |
| 8 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.70082446541517 | 3.50201347941095e-09 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.70091775867051 | 3.8669982540483e-09 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.70101893659492 | 3.56814347352923e-09 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.11530548173072 | 2.8425225220193e-37 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.06496754867833 | 5.88061116261364e-07 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.31888798395852 | 1.42074320147361e-29 |