Chr:
Chr4
Start:
34929964
End:
34934410
Strand:
-
Ref_name:
LOC9272593
Sequence
(XR_001544986.2):
AAAUUUUUUGAAUAAGACGAAUGAUCAAACAUGUGAGAAAAAGUUAACGGCGUCGUCUAUUAAAAACGGAGGUAGUAUGUAUGCCCAACCGUUAAUAAUUAAUCUAUUUAGCAAGUUGCAUGCAUGUGCAACCCAUUGAUCGACCCCAUAUCAUGCAUAUGCAUGCCUAAUGUGGCAGUGCAAUCAAGAGGGGCCGACCCAAACCAUGCAUCUGAAUUAAUCUUUCUUCUUUUCUUGUAUGUUUUUUUUUCUUUUGCUGUUGUUGCCAGAUCUUUCUUCUCUGUCUAUCAGUCAAAUGCCCUGUGCAUAAAUACAUACUCCUCUUUCCGUUUCAAAAAAAAAAACUAGUUCUAACUAUAAAUCUGGACAUUAUAAUGGUAUGGUUCCAAUUUUCCUUUUUUUUUUAAGGGAGUAGAUCAUACGUUGCAUCUGUAGCUCAAUUUGAUGUUCCCCCGUGUGGGUCUCGAUCGUCUCAGGUUCAGGAAUUCAGAUCGACGUACAUAUCAUAUGGCCCUACACGGCAGCCUGCCAAGUCGGUAGGUAGGUAGGUAGCCAGCAAUCGAGUUGAUCGAUCGAUCGAUCGAUCAAGCAUUUGAGCGUGCAUGCGGUGCAGUCGUGCAUCUAGCAUGUGUGCGUGUGUGUCAGUGUGUGAAAUGGCCAAAUGCUGCUUGCAACAACAAUGCAUCAAGUUACGGAUUUAGGUCUUUUUCGUGGGGUUGACUGAUCCCACAGUUUUUUAAAAAACAUCCUAUAAACCUUAAUUUUUAGAUAUAAAUAAAAAAAUAAAGAAAUAACGUACUCCAAUAUAAACCACUAGUAAUUGAUCUCAUAUGUUUUAAUUCCCCGCCACUUUAUACACGAAUCGCGCCGGGUGGCUGUGGAUUGGAUUAACUGAACUACGGCCGUCCCUGUAACCCCCGCACGCGCGCGUGUACUGUUAACUUAUCUACCUAGCUGUAGCUAUUUGGCUUCCAACUGCAACAUGGAGUGUUUGCUAUGCUAUGGAACGCCCAAAUAUUUAAAGCUGCUAGCUACCUAUACAUAUUCAUUCAAGUAUAAUGUGUAGUACUAGUACUAAUGCUUAUUUGUUUUCUUCAAUUCCAAACCUUAAAUUUCUUGCUUUUCAAACUGUUAAAUGAUGUAUUUGUUAUAAAAAAAUUAUAUAGAGGUUGUUUAAAAAAUAAAAAAAUCAUUUUCAAGUUUAUAUAAUUAUUAAUACUUAAUUAAUAAUAUCUUAAUGAUAUUUCCCAUUUCGCGUGCACUGAAAAACUCUCUCCAACUUCUGGAAAGAACGCAGCAUUAAGAAACAGAUAUAAUUCAAAACCUUAGGGAUAAACGCAAGCUAUAUAUUCUUUUUUUUUAAGAACAACGCAAGCUAUAUACUCGAUCAGAUCAUAUCAAACUAGGCGGUUACGACGUUGGAUAUAUACUUCAUAUCCUAGCUACUCGAUCUAGCGGUUGAAAACAAUUCAUUGGCUUCUGUCGGGGUUAAACUGCUGAACAUCCUUCGUGCUAAUUACUAUUGUAUACAUCUAUAUAUUCUACAAAUUAAUAAAUGUAAACAGUGAGAGUACUUCUCACUCAUGCACACACACAUAUAUAUUUUUUACUACAGUUAGCUGUGCACAAAGAACACAUGUGCAAUAUAGAUCAAUGAAUAGCCAUUUCACUAUGGACGAAGACUGGAUGCAUGACACUCGUGAUCGACUGUUUUUACAUGGAUAUGGAUCAGUCAGUAAUUUCUUCUCGUUGUAUAAUAACUAGGGAUAAAACGAAACUAAAGUGAAACUUAACGGGCAUUGCCAGGGGUAGAGUCGUAAAUAAAAAGAUGGGCAGCAGCAGCAGGAGAGAGAGAGAGAGAGAGGUCAGCAUUGGAGUGGGCAGAAGUAGUACGCCAGACAUUGGGUACACUAGCAUCUCCGUGGUGGGCCCUUGUGUUCCCCGGCCCAUCAACCUCUCUCUCUCUCUCGAUCGCCUUCGCCUUCACUUCACACGCCCAAACUGUGAAGCUAAGCUAAGCUUCUCCGCUUCUCCAUCUCAUUGCCCUGUAGCUUUCGCCUCCCUCUUCCAGCUAGCGUUGCUUGUUUCCAUUUCCUCUCUCUCUCUCUCUCUCUCCAGCUAGCCUAUCUCUCUCUAUAUCAAUCUCGAUCUCCAUGCCAUUGCACUCGAGCAGGCUCAGCUACCUCCUUAUAAACCCCAGGCUAGCACCUAACUAUAAUACCACUAUACACUUAGCUUAGUGUUUACCUAGCUAGCUAGCAGCUGGCUGCAACAAACAUUCUGCAUGCACUUUGAAUUCUAGAGAUAGGAGAGUUAAUUAGAUAGCUUAGCUACCACAAUGCAUGCGUGCAACCUGAUAGCUUAGCUACGCGUAGUUGCCAAUUCAACCGGCCGACAUAUAUAUCGGCCUGAGGAAACUAGUGGAGGACUCCAAAGGGAUCGCAUUGAUCUGGCUAGCUAUCUCGAUCGAUCGCCUCAUCGAUCGACGACGACGUGCGUGAUCGAUCAGUGCAAUCCCUUUGGAAUUUUCCUCUUGCUUCCGCCUCCUCAUCUUCCUUGAUCGAUCGAUCCUUUGCCUGCUGGACGCGCUUGCCUGCCGGCUUGCUUCUUCCAUCGCCGCCUUGAUCAAUCCGCAAGCUGCUCCAGAUUCAGGAGUUAAAUCGAAGCCCAACGCUAGCACACAGUGCAAGAAGGUCUUUUGACAGACAGGGUAAAACAUAUAGAGUCCCGAGUCCCGACAAGUUCAGUUUAUGACGAUGGAAUCAAUCAAAGGAAUAUGGUUCGCACGGCUGAAUCGCUGAACCACUCUGAAAUCUGAGGGCGUGUUUGCUUGCUGCCCUCAGAUUCGCGCCCGGCUCAUGCGUCGAUCUCAGGCGUCCGAUUUCGGUCGCCUGCGGUCGGAUCGACCUGCCUGAGCAAUGGUCUCCAGGCGAGGGCAGCAACCAAACAGCCCCUGAAUACCUGGCUAGCUAAGGUUUCUGAUCUAUUCUGGCUGAUCAGUGUCCAUUUUCUUUCGUCCAUAAGGCCGAGUGCAGAACAACUUGUAUAUAUAUAUUUAUGUGUUGAUCUGGUAAUUCAAUGUAGUAGCAAAGAGGCAAUUGAGGAUUCUGCACACACGCAUCUACUGUAGCAGAAUACUGAUGUCUUUUAUGUAAUCCUGUCAAAGUUACUAGUAAAAUUUUCUUUCAGAGAGGAAAAUCUCAAAAGAUUUCUCAGCCGCUGGCCCCUGGGAUGCAGUAUUUCCUGGCGGAAUUUUGAAGCCCAUGAGGCAGUGAAGCCCAGGCACGCCUUGUAUGCAGGGCCUGAUGGCAUGGCGAAUUACAAGGCCCAUGAGAGAUCUGGGCUGUUCGACCUUAGUUAGCGGCAGGGCUUGAUGGGCCUACAUAAAGCCUCGACUUUGGCGGCCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.68%
ME_num:
MEP:
65.45%
HE_num:
HEP:
16.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.82
Avg Expression:
14.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.33887439393388 | 4.81331489295234e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.86530658091379 | 4.91753236942867e-38 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.2862341956573 | 2.95050224155573e-62 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 8.16778996087465 | 9.20685702520691e-41 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.11695869541286 | 3.66988536383162e-30 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.98931322598832 | 0.000209657474590557 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.30052195324604 | 0.000581645898539407 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.14777827697187 | 0.0380804567413038 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.83065935712319 | 1.10056679360601e-12 |
| 10 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.25597865092501 | 0.00098101124471711 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.0230325370626 | 4.46595723283419e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.06323097275815 | 0.0217677553962961 |
| 13 | 9311 // leaf // control--/--9311 // leaf // salt | -1.54602090382583 | 3.32633494789304e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.93701290478984 | 3.7391609094002e-39 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.501935752352 | 4.16512825351993e-11 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.69862003074794 | 6.04076979897541e-11 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.31815818892679 | 0.000299586163363007 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.9327277651289 | 9.12736514863936e-118 |
| 19 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.37536516156693 | 0.000783008930255136 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.41926805130459 | 1.9861565026185e-09 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.98811105823732 | 2.98486839792354e-10 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.40389447888824 | 0.00120923761917824 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.09221322173035 | 2.69555510663864e-15 |