Chr:
Chr2
Start:
13990476
End:
13994432
Strand:
-
Ref_name:
LOC9272581
Sequence
(XR_001542788.2):
CCCUUCCUCCCACUCUCCCGCGCCGCCGAACCACCCUCACCACCCACCGCAGCCGCGUCCUCCUCCUCCCCACCGCCGCCGCAUCAUCCCCCUCCCCACCGCCUCCGCAUCCUCCUCCCCAUCUCCUGUCGCGUCGUCCUUCGCCACGACGAUCCCCUCUCUCCGUGCAUCCAUCGAUCCCGCGGCGACCACCGUUAUCGUCAGUCCCUCCUCCACGCCCCCAACACCGAUCGCGCCGUCCUAUCUACUGUCGUCGCGUCCUCCUCCUUCUCCGGUCCUCCCCAUCAACCGCCGCUGACGCCCCUGCCUCUGAGUCCACUCUAGAUCCGCCGACGCCUACUCCUCUGCCCACACGCAACCACCGCCCCCGCCGCCGAGUGUCCUCCCCAGCGCUCCCUCCCUACUCCCUGGCGCAUCCUCCCGGCGGUCUCUCCUUCGGGCACCCCUCCUCCCCGGCAGCCCUCUGGACGUCGAGGGGGGCAGUGGCGGCCGAGCAAGGAUUGCCCUGGGGGGACGACGAGUCCCUGCUCCUUGGCAUGGCAUCAGCCUCAUCCAGCCCGGCGACCUCUCCUUUGGGCGCCCCUCCUCCCUGGCGGCCCUCUGGAUGUCGAGGGGGAAGUGGCGGCCAAGCAAGGAUUGGGACGAUGAGUCCCUGCUACUCGACCUGGCAUCAGCCUCAUCCAGCCCGGCCUCCAUCACUGUGCCUCUCUCUUCUCAGAUCCACUGUAGCCGGAGUCAUCCUCCAUCGCGCCUCUGUGCUUUUGCUCACCGGCGCCGCCUACCAGCAUUACAUCUCUGAACUCUCACCCUCUCCAUCGAGAGUUUGCACAAGCCUUUAUAAACAUAUUCAAUCACCUAGCAAUUUGGUUGUGGGAGAUGACUUGCAUUGCAUAAUGGAGGUAAAUGGACCAUCAGCUGUGGUAAAUGAAAAUCCAACACAAUGUAAUUCCAUACAGGGCACUAUUUGAAUCGCUUAUCUGGACAACUAUCUUUUAUACAAAGUCGUCCCCAAUUCUUUACCAGAAAUCUUAUGUUUAGUUAUUGGCAAUAAUUGGUGAAUAAUUGAUGAAAUAUGUGGUACAGUUAAUGUGCGUGGCAUGCAGGAAAGAAUAGCCAUCGAUCUGGACUAAAAAUGUUGCCACCAUCUGGAAUUAAAAUACUGCCAAUGAAGUUGCUCAGUAAUAUUCCCAGGGUAUGUGCCCUGCAGACAAUAACCAUGCAUUUUUUUUUCAAUAUACUAGAUUCAAGCUAUCACAUAUCAUUGUUGUCGCCUGUCAAACAAGUAUGAUAAUGUCAUGAUCUGGCUCUGAAAUAUCUUGAGUACUGUUUGAAGGUAAAUAUUCCUGAAAGGAUUAUAGUAAUAUGUGGGGCACUUUGCUUAAAUUUCUAAGAUACGCCUGUCGUAUGGGAAAUUUUCAUUAUUUUGGGUAAGAUACCAUGUUUUGCUUUAUAAAUUGCACAUCUACUUUUUACCAAUGCUUGCAAUAAAAUUUCAGAAGUUCAUCAUCUCUUGGUGCUACUUUCCAGCUAUUUAUAUUGCAUUAUCUCCUUCUGUAGCCUUUUUUAUUCGCCGUUAUAGCCUUCUAUGCCUGCUACAAUAUAUUGCAUCAUCUAGCAAGGUUUGUUUUAAUCCUCUUCAUUAUUACAAACACUACUAGAAAAAUAAUUUAUCGCCACGAAAAAAAUCAUAGCAUCAAUGUUAAAAUUGUGGCAAUAGAUACAUGUUGCCACAAUCUUCAAAUCGUUGCUAGCCGUGGUAAUAAAUAGCGUGGUAAUAGUUUAUUGCAAUGAUUUUUAUUUAGUUGUAAUAAAUUUUGAUAUUGCCAUAAAAUGGAUGUGGCAAAAAAUAUAUAUUGCAACACUUCACAUCGUUGCAAUAAAUAACUAUUGCCACCACUCCAUGUGUGGCAUUAGUUCUACAUACCAAAUUAAAUGUUUCAAUAUUAAUUUAUCAUCCUAACUAUUUUCUUUUGAUAUCUUGUCAUGGCCAGGAUUCGAACCAAAGAUCUCUCCCUCACGCGCGCUCUCCAUGACCAACUCACCUACGCAUCAAUUUUAUUUAAAAAUGCAUAUAAUUCUAUUUGAGACUGCCUAACGAGAUUUGAAUCAUGAAUUUGAGUAUCUAAAAUAUUUCAAAUGAAAAAUUGAAGUUUUAGAUCUCAUCGAGAACUAUAAAUUUCAUAUAAAAUUUGUCCUAAUCCGUGUCCAUAUGAAAAGAAUAAGUUAAAUUAUGAGAUAAUAAAUUUUUUAUUACAACGAAUUUGUUGAUCAUGGCAAUAGAAAAUAGUGAAAAGUACCAUGUACUAUGCAAAUUGCCACAAAAAUUAAAUGUGUGGCGAUAGAACAUGUUUUUUUUUGCAAUAGUAAUGUUUUUUUGUGGUGAUAACUUAUUUUCUAUUACAACAAAAAUACUGAAUAAAACAACGAUCAUAAAUCGUUGCAGCAAAGUAUAGUUAUUUGCCACAGAAAAAAUAUCAUUGUGAUAGUACAAUAUAUCGCCACGAAUUAUUUUUUGUUGUAAUAAAUUGGUGGCGAUAGCUAAAUUAUCUUGUAGUGAAACGGAUUCACCUAGAUAGGCCAGAUAACCUGAACAUGAUCCCAUAUUUUUCUUCGUCAGAUAAGCAGUGGGAAGCAGUUGGAGGAAUUUCUGGAUUACAAGGACUCGAUUGAAUUCAUCUUUUAUGAGUAGAUAGAGUAGUCCUUGAGCAUGAGCCUGGCUAUUUUUACAUUAUUUGCACACGAUUAAAAAAAGAUGGAUAAAGAAUAUGAGGUCCCAAUAAUUUCUACACAGUUUGAUCUGAAAUUCGGAAUAUUCAUAUCCUGAGACUCAGAGAACCAUCAAGCAUGUCUACAUGUAGGAUGUUUUUCUUUGAUGCUGUAGUGUCAUUUGCUUGUAGUGCUGGAGGGUUAUAUCUAUUGACGUGAACUGUACUUCAAACUUUAGAGAGAAUCUAACGUAUCAAAGGUAGCCCUGUACAGCUGUACUCCAUACAUCACUUCAGUGUCUUCCUUGGUUGUUCGCUAGCAGCUGAAAGUGUUGUACUUCUCUGAACGCGCAUGCAUGUUUUGAGAACGAACAUAAUAACACUGCAGAGGAUUAUCUUUUCUAACUGCAAACAUGAGCGAGUUGUAUCACAGUGGUGUUGUUUGGAUGCUUCUGCCGCUCCUCUUCAAAACUUUAGCUGAAUUUGUUUCAUGCCAUUUUGCGGUUUGGAAGAUUGUGUUACUUAUUAUUGUUGUUGGUCUAUUUAAUUGUAUGUUUUGGUGAUCAGUGCUCAAUAUCUCGACCUGCCUAAAACUUUGUUCGUAAUCUGAAUUUUCGCUCUCCUUUGAUUCUCAUGUUGUAUGUAAUUUUAAUUUUCCCGUUGCGAAUUAAAACCACUUGGCUGGUUGAAUAAUUUACUCUUUGACUGUAUAUUUAGUUUUUCAACUAAUCACAUAGUCGGGGGCUACACCUAUUAGUCGAUGCACCUAAGUAUAUAUUCCUUAUUGUUUUUAAUUUUUUUAACCCUUGACAGCCUCAUGAUUUGGUAAAAGCACUCGGGAGACCAUUGUUAAGAUGAUUGAAGCACUCGGCUUUUGAUGAUUUAAGUUCGGGAGAAGAUUGUCUUUUCGACUAUGAAAGUCUCAGAGGCUAUUGUGGAGAUUAUGGUAACAUUUACCCACAUGGAUAGCUUAUCCGACUGGAGAUAGGAUGUGGGCCAUAUUCGUAUAUUAUGUAAAUAUACUAGACUUUGGAAUAUAUAUUGCGGUGUUUCUCAAGGCAUAUUCCAUAAGUGUUACUAGUAUACAAUUAUGUAAAUAUAUAGAGGAUCCGAGUCAUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.51%
ME_num:
MEP:
57.72%
HE_num:
HEP:
22.56%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.56
Avg Expression:
7.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.00511274643061 | 0.00740510193817295 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.0052084494626 | 0.00760459005242049 |
| 3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.00529494261931 | 0.00742893770668148 |