Chr:
Chr3
Start:
34464293
End:
34465103
Strand:
+
Ref_name:
LOC9272554
Sequence
(XR_001544375.2):
GUAAAGUUUGGGCCCACCUUAUCUUCUCCACAACUCAAGCAAACCACAUCCUCUCGUUUUUCUUCUUCCCAGCGGCCGGCCGGCGCGCGGCGGCGGCCCCUUCCCUUUCCUCAACCAAAGCUCGAGCUCCAGCAACCGGUCGACAGCAAGCACCCAACAGCUACCGCUCUCGACGAGCUCGACGGAGCCUCCUCUCUCACCGCACGCCGUUGUCUCCGUCUUGCAUUAGUUGUUCUGAUCCAACUUUCUCAUCUCCUUUCCUCUACUUUCUUUCUUCAUAGCGUGCAGCACAAGAGCCCACUCCGGCAAGCAGUGAGCACCACAAGAUUGCUGUUGCUCCAGCCUCCAUCAUGAUCCAAAGGCAAGGGCAGGAAGCAUUGGAGAACAAAGAAGAUUAGUUCAACUUCAGUUCUUUGCGGAUGCAAUUUUUCAAGUUUCAAGCUUUCCACUGUUGUUGCAGAAGCAAGCUAGAAUCAAGUGGUUUAGAUUUGCUUUCAAGAACGUGUGUUGUAUUUUAUUUUAUUAUCGUUUGGAUCUGAGCGAUGAUAGAAUCAGUUCAUCAGCACAUCUGAAGUGUCCAUCAUAUGUUUGUGAGAGGAAUAUUUUCAGCUCCAUUGUCGUAGAAUCAAUGUAAUGUAAAAUGAAGAAUCAAUGUAAUUGAGUAUUUUCUAUUAAUAAUAGAAUGGCAUUUUUAUUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
20.93%
HE_num:
HEP:
74.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.78
Avg Expression:
101.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.76144633777857 | 0.000668995927141753 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.44807782175987 | 1.57534184757406e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.18974839136406 | 2.84246571932396e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.73644965483686 | 0.00273202687898069 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.93689188376124 | 1.14604924228972e-14 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.40243649375347 | 1.37124747350623e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.35594890366284 | 0.0033819338594983 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.41932609674226 | 4.64556422671218e-05 |
| 9 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.46676254284405 | 0.0116708710323354 |
| 10 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.34938205610991 | 0.00884202755404541 |
| 11 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.63537709408846 | 9.93954357695951e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.47066143929671 | 7.22178036725175e-16 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.1966290008141 | 2.85401203888047e-10 |
| 14 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.16676583832793 | 8.11858583531773e-16 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.07041097961427 | 2.56427369330971e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.32299413198677 | 1.34745063928605e-06 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.43510400265743 | 2.15226521742983e-11 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -3.12819872102978 | 2.31921035949237e-32 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.17031522924031 | 2.94362871308464e-08 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -3.12829319740681 | 2.98500015176078e-32 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -3.12837297944011 | 2.46192151123465e-32 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.2236121080752 | 4.49869632636413e-20 |
| 23 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.00132746397442 | 0.0200135597433857 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.53664126099647 | 0.00400959434677708 |
| 25 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.52981277623842 | 2.30523113904047e-12 |
| 26 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.86522586261547 | 4.43328997167758e-05 |