Chr:
Chr3
Start:
837643
End:
841799
Strand:
-
Ref_name:
LOC9272533
Sequence
(XR_001544222.2):
UUUGGUUUUUUGUCGAGCCGAGUCGCACACGGUUAGGCACGCUCACGCGCACUGCGUCGCGUUGCGUGGUGCGGCGACCGAACCACCCAAACGCGCCAUGUUUAUCCAAUGGGAUUACCCGCGGAGAAAUCCCACGCUCUCCACCGCCCCGCGCGCUACGGCGCCGGUGAGAUCGAAUCGCGGAGAGAGGGAGAGAGGAGGCGAUGGACGGCGGAGCGGAGCGGAGCGUCCUCAUCAUCCGCGGGCGUUUGCUAGGUAGGUGCAUCCGAUUUCCAUCGCUAGCUUGCGGCGAAUCGCCCUUGUGGAUCCUUGAGGCGAUGCCCUAAUCGCGCUUUGCAAUGCGGGCGGAUGUACAUGCGGCGGCUUCAAGGGGCGACGGUUGGAGGAGCAGCGGUGCCCGCAGGUGGUACCUCAUUUGGUAGUGCGCCGAGGGGUGAGACGAAAGUGAUGCAACUGCAAGCGGAUCGCUCGCCUCCUCCAAUCCUCGCAUAAAUCAACAGACCAUUUACCUUCAGAAGCUGGGGUCAUCUCUACACUGACUUCACUAGUUUUGUUAAGCAAUUCCCCAUCCCAUGGAGAACCAGGAAACAGAGUAAUAGCUCAAGGUCCAGGCAUGUCAUCAAGGGUUUGACAUCAUGACUCAAAUUGUUGGUGGCAUGUCAUUUCAGAGCGCUACAGCAAUCCCAGGAUGACAAAAUGAUCCAUUUAUUGAUGCUUAGCAACUCUGCUGGGGGCAUACCGUAUGAUUCCUCGUGAAGUGGAGUGGAUCAUGACGGUAUUGAAUUUUGAUUUCUCCUUGCUGCUUGACUUGUGUAAGAAGGCCCAGCCUAUGCAGCCGUGCGAGGUUUUGUAGGCCUUGGUUAGAACAUAGAAAUGGGCAGCGUCGUGCCCUUAGUUCAUAUAUACUAGUUUCUAAGAAAUUCAUAUAUAAGGAGUUUUCGCGAAAUCGCACCGUUUGAUAGACCAAAAGGCAUGGCGUUGGAUGGAAUAGUUGCAUUCCUUAGAAAAGGAUGCACCCUGUCUUUCAUCCUUUUUCCGAAAAAUAUUCUUCCUGUUUCUUAAUGUAUAAGGAUCAAAGGCGUCCUUCUUAUGGCAAAGGAUCGUGGCGUUGACGCUACAGUACUGUAUAACACUGCAGCUAAAGCACAUAAACAUGCAAUAGCAUGCAUGGGCCAACGCUCUUCAUGAUUGAUCAUUCAGCAUAUGCCAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
31.3%
HE_num:
HEP:
68.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.74
Avg Expression:
39.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.92348710897602 | 1.93154209016585e-23 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.76054858501931 | 5.86488338677302e-20 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.78085855193617 | 5.42716299218358e-22 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.36160892477653 | 1.5315808450052e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.65867660729602 | 5.26601393627378e-15 |
| 6 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.52172122787322 | 2.03199919128643e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.05055871678196 | 4.22611261276876e-07 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.59647653316868 | 1.16383744064389e-18 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.23166748956574 | 9.44838687460955e-13 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.07685804104874 | 1.21174287250526e-05 |