Chr:
Chr12
Start:
25812378
End:
25814767
Strand:
+
Ref_name:
LOC9272527
Sequence
(XR_001542265.2):
AACCCAACCUGUUGCCUUCCCAAACUGUUCGUUCUCCUUCCACCCACGCAGAUGCGGCGCCGCCUGGUUCCCCUUCCCCUCCUCCCGCAUUGCACGCAGCGACAGCCAGGGCGCGUGCAGCGGUGCUGCCGCUCAGCUCACUCCCUCCCUCCCCUCGCGUCGGUUCCCUUACCUGGGCAGCAGUACGCCAGGGAGGCAGAGAGCUCCCCGAGCAGGCGCCCCACUCCCAUAGGCUGUGGCUCUUUCUCUCCCAUCGCCCUUGGUUUGUUCGUCUCCUCGGGCUGUCGCAAAACGAAUUCACCCUUCACCUCCCUGGUGAGUAAUAGCCACCUAUUUCACUGUAAUAAUCCGCCUUUUAAUUCCUGUAACUGAUGGUCAAGGUGAGAGGCCAAACUUUGGAUUUCUUUUAUGGUUGAGGGGAGUUUUUAAGAGGGAUUGAGAGCUAUUAAUUGCUUUGUUUGGUUAGGAGAUAUGAAAAUUUUGGUGGGUUGGGGAUGGGGAAUUGAGGAAUGAACUCUAUUCUUUUCAAUACCUAUGUAAGGGGUGGUAAUUUGAAGAUAAUUCCUCCUUUACUUCGCCUAAACAAAUCUCAGCCAUCCGUUUUCAUUAAUGACCUAAUGUCCAACUAAACUCCCUAUCAAUUUCCACCACCUCUACCAAACAAGAGACUGGGAUGAAAAAACAAAUUCCCAUCUUAAUCUCAUCAUCAAUUCCCUCAUGUAAACUCCCAAUCUCAUUCCCUCAAGUUGCCAAACAAGCCGUUAAGUCGUGCAUGUGCCCUCAACCCUUCCCUCUCCUCUUUUGCAGCACCAACCAUGUCCUUUGCAGGUUUGUAGCAUAUAUAUCAUGUGAUGGUUCAAUUUUAUGGUAUGGCCGGCGUUGGUUGGAAAUAUUUUCAGAUGCCCCUGUCAUAUGUUAAAAGGAAUGGCUGAAUGAGGAUCAUAUAAUAAGCAUGGAUCUUUCUAUAUCCUUCAACCCUGUUGUUGUCAUCAAAUGGUGGUUUUUUCAUGUUAAGAACGAAUUCAAGGUGGACUGGUGUUUUUUUAUAAUCCGUGAGAACUGGUAAUUAUCACCUCAAAUUUGUUCACUUUUAUGGUGGUUUCUUAAUCGUAUUGAAAUAGUUAAAUUUUAACUUAUACCUGCACACUAUCAUCUUUGAAUCACUUUGUCUCAUGUGACCAUGACCUUUGAUUUUAGAAGGUCACCAACAGUCAAUGGUGGGCUGAUUGAGUUUGCAGUUUUAUAUGUAUAUGUAUAUAUCACCAACAAAAAGUCAUUACAAUGAAAUAGAUGGAUGGUUGGUUCAGUAUUUUUUUUUUACAAAGAACUAAUUGCUCAGAUUUACUCGAUUGUCAGAUUUAUUACUCAAUACAAUUAAAAAAAAUCCUUUAGUUAAUUGUCUUGCGCGCUGCACAUACCACCAACAUUGGCAAUUCAUAUUGGUAUUUCCUUUUUUAUUCGCACCACAAUAAUUCGUGUAGUUGCUACUGUCUAAUUUAUACUCCGAUACAGAGUUCUUUUUUAUUUCUUUCAGUUCAGUCUUUAGGAUCAAUAAUAAGUUCAGAACUUCAUAUUACUGACCUGGUCUUUUUCUUGGUAUGUUCUUUCCUACAAUGAAGUGUACACUACGGGAUAUUUUGAUUUUUAGUUAUGGACAUAAUUUUUAUCUAAUAUUUUAUUUUGUUUUCCUACUACUAGAAUAUGCAGGGGAAAGAGGAAUCAAUAAUUAAAAUAUUGAUAUCGCAACAUGCUUCUUGCUGGUGAAUAAACACUUGAACAAAUCUAGCAGCUAACUUAGGUGCGGUCAAUCACAUAAUCUUUGUUAUUGAUCCUAUAAUUUCUUGCAAAUAUUCCUUAUUUAAGAAUCAAGCAAACUAAUUGUGUUGUAAGCCUAAAGAUUGUAUUUAAUUCCAGUCAAAAAAAAGAUUGUAUUUAAUUAUUUUUUUAAUUCAGUAUGCCUUACAUGCUAUACUGUGCACCACUAAAAAGUACGUCAUAGUUUAGAUUUUAGUAGUACGUGACGAGCAGAACUGUUGCACCUUUGCAUUCGUUUUGCAUAGCAACAAAACAAGCAUGUGGUUCUGUUAGUCUAUUGAUUUUUUUUCUCUUGCCUAUGUUUAUUUGUUGCUCCCAUGUCUCAAAAUAGAUGUCCUCUUAUAGGAGUAUUCAAUCAAGUGAUGCUCACACACCUAAUAUUUUUAUUUUCUAAUUCUCUGUAACUGUACAAUUUCACUCUUUUUCGCUAUGAUUUAAGUUUUGUUCUCCAGUUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.67%
ME_num:
MEP:
58.13%
HE_num:
HEP:
36.99%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.67
Avg Expression:
9.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.03049007040745 | 0.000306978514388774 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.19142421805039 | 0.000283073715978049 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.22607290667048 | 7.50253100819035e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.8345099361591 | 3.10934782974305e-09 |
| 5 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.30626252633604 | 4.53366288425207e-05 |
| 6 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.31294430002514 | 4.26177481674937e-05 |
| 7 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.31305204078386 | 4.05702563554153e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.20556109486571 | 1.57385783945055e-06 |