RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9272442

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr7

Start:

21391965

End:

21393539

Strand:

-

Ref_name:

LOC9272442

Sequence
(XR_001547301.2):

UAGAGAUGGAGGCGAAAUGUACGCGAUGCCGAACGACUCCCUCGUCGGCGCCGCCACGGAGUGGGACAGGCGGCGGGCGAGAUCCAACGGGUGGCUCCGCCGCGCGGUCUACAGCUCCGCCCGUGACCUCGACGACGCGCGGGCCAGCCCCAUGGCCGCGCACGCGCCGCUCCGCUUCUCUGUUGCGCCAACGGCAGCCGCCAAGCCCAAGGGUAAACCAGAUUAAACCAGAAGAUGUGGUUGCCCAGCGAGGAUGAGGCUGCUGAAAUGUGCUACUGGUGGUUAUUAUGUCAAAACAUUAGUUGAUUAUGCUGUAAAUAACAUUAGAUGUGCUACUGGUGGAUAGAUAUUAACGUUUACAUAACAUUCUUCUUCUUUUUGAUCAAAUUGAUAGGGAAAAAUGGUGCAAAACGACGUACAGUGUGAUUCUUCAUAACACAUGUCAGAGUUAAACGUGCGAGUGUGGUUUGAGUUAUGCUACAUCUGGGCGUGCGUACUAUUCCUCAAUGCCAUAUUAAUGAUGCGAUGGACCAAGAAAGCUCGUGACUCUAUCCCAGCACACCUUGGGACCUUUCCAGAUGAUGUUGGGAUGGCCCAGGCAAGAGUAUUCAGGCAUAAUGUUUUGCAAAGCACUGCGAAUGAGAUAGUUAGGCUCGGUGAUCAGGAUAACCAAUCUUUUGAGAUUCUUCUUCGUUAUCUUGGGGAAGCAAAGGAGGAGAUUGCCAAAGCCGCUUCCAAGAUGUCUGGUGCUGCGGCCAGUUUUCAUUUCAUUUCAUUUCAGAUGUUUUCAUUUCAGAUGUUUCAGUCUCUUAAUGGAAUCCAUGCAACUGUACCUUUCGAGCUUUUCUAAUCUAAUUAAUGUGAAAUUUGCAAAUUCA

Sequence
(XR_001547303.1):

GCGAUGCCGAACGACUCCCUCGUCGGCGCCGCCACGGAGUGGGACAGGCGGCGGGCGAGAUCCAACGGGUGGCUCCGCCGCGCGGUCUACAGCUCCGCCCGUGACCUCGACGACGCGCGGGCCAGCCCCAUGGCCGCGCACGCGCCGCUCCGCUUCUCUGUUGCGCCAACGGCAGCCGCCAAGCCCAAGGGUAAACCAGAUUAAACCAGAAGAUGUGGUUGCCCAGCGAGGAUGAGGCUGCUGAAAUGUGCUACUGGGAAAAAUGGUGCAAAACGACGUACAGUGUGAUUCUUCAUAACACAUGUCAGAGUUAAACGUGCGAGUGUGGUUUGAGUUAUGCUACAUCUGGGCGUGCGUACUAUUCCUCAAUGCCAUAUUAAUGAUGCGAUGGACCAAGAAAGCUCGUGACUCUAUCCCAGCACACCUUGGGACCUUUCCAGAUGAUGUUGGGAUGGCCCAGGCAAGAGUAUUCAGGCAUAAUGUUUUGCAAAGCACUGCGAAUGAGAUAGUUAGGCUCGGUGAUCA

Sequence
(XR_001547304.2):

GCGAGAUCCAACGGGUGGCUCCGCCGCGCGGUCUACAGCUCCGCCCGUGACCUCGACGACGCGCGGGCCAGCCCCAUGGCCGCGCACGCGCCGCUCCGCUUCUCUGUUGCGCCAACGGCAGCCGCCAAGCCCAAGGUCGGUAAACCAGAUUAAACCAGAAGAUGUGGUUGCCCAGCGAGGAUGAGGCUGCUGAAAUGUGCUACUGGUGGUUAUUAUGUCAAAACAUUAGUUGAUUAUGCUGUAAAUAACAUUAGAUGUGCUACUGGUGGAUAGAUAUUAACGUUUACAUAACAUUCUUCUUCUUUUUGAUCAAAUUGAUAGGGAAAAAUGGUGCAAAACGACGUACAGUGUGAUUCUUCAUAACACAUGUCAGAGUUAAACGUGCGAGUGUGGUUUGAGUUAUGCUACAUCUGGGCGUGCGUACUAUUCCUCAAUGCCAUAUUAAUGAUGCGAUGGACCAAGAAAGCUCGUGACUCUAUCCCAGCACACCUUGGGACCUUUCCAGAUGAUGUUGGGAUGGCCCAGGCAAGAGUAUUCAGGCAUAAUGUUUUGCAAAGCACUGCGAAUGAGAUAGUUAGGCUCGGUGAUCAGGAUAACCAAUCUUUUGAGAUUCUUCUUCGUUAUCUUGGGGAAGCAAAGGAGGAGAUUGCCAAAGCCGCUUCCAAGAUGUCUGGUGCUGCGGCCAGUUUUCAUUUCAUUUCAUUUCAGAUGUUUUCAUUUCAGAUGUUUCAGUCUCUUAAUGGAAUCCAUGCAACUGUACCUUUCGAGCUUUUCUAAUCUAAUUAAUGUGAAAUUUGCAAAUUCA

Sequence
(XR_001547306.2):

CAACGGGUGGCUCCGCCGCGCGGUCUACAGCUCCGCCCGUGACCUCGACGACGCGCGGGCCAGCCCCAUGGCCGCGCACGCGCCGCUCCGCUUCUCUGUUGCGCCAACGGCAGCCGCCAAGCCCAAGGUCGUCGGGUAAACCAGAUUAAACCAGAAGAUGUGGUUGCCCAGCGAGGAUGAGGCUGCUGAAAUGUGCUACUGGUGGUUAUUAUGUCAAAACAUUAGUUGAUUAUGCUGUAAAUAACAUUAGAUGUGCUACUGGUGGAUAGAUAUUAACGUUUACAUAACAUUCUUCUUCUUUUUGAUCAAAUUGAUAGGGAAAAAUGGUGCAAAACGACGUACAGUGUGAUUCUUCAUAACACAUGUCAGAGUUAAACGUGCGAGUGUGGUUUGAGUUAUGCUACAUCUGGGCGUGCGUACUAUUCCUCAAUGCCAUAUUAAUGAUGCGAUGGACCAAGAAAGCUCGUGACUCUAUCCCAGCACACCUUGGGACCUUUCCAGAUGAUGUUGGGAUGGCCCAGGCAAGAGUAUUCAGGCAUAAUGUUUUGCAAAGCACUGCGAAUGAGAUAGUUAGGCUCGGUGAUCAGGAUAACCAAUCUUUUGAGAUUCUUCUUCGUUAUCUUGGGGAAGCAAAGGAGGAGAUUGCCAAAGCCGCUUCCAAGAUGUCUGGUGCUGCGGCCAGUUUUCAUUUCAUUUCAUUUCAGAUGUUUUCAUUUCAGAUGUUUCAGUCUCUUAAUGGAAUCCAUGCAACUGUACCUUUCGAGCUUUUCUAAUCUAAUUAAUGUGAAAUUUGCAAAUUCA

Sequence
(XR_003243275.1):

CCAACGGUUAAGCGAGUGGUAAACCAGAUUAAACCAGAAGAUGUGGUUGCCCAGCGAGGAUGAGGCUGCUGAAAUGUGCUACUGGUGGUUAUUAUGUCAAAACAUUAGUUGAUUAUGCUGUAAAUAACAUUAGAUGUGCUACUGGUGGAUAGAUAUUAACGUUUACAUAACAUUCUUCUUCUUUUUGAUCAAAUUGAUAGGGAAAAAUGGUGCAAAACGACGUACAGUGUGAUUCUUCAUAACACAUGUCAGAGUUAAACGUGCGAGUGUGGUUUGAGUUAUGCUACAUCUGGGCGUGCGUACUAUUCCUCAAUGCCAUAUUAAUGAUGCGAUGGACCAAGAAAGCUCGUGACUCUAUCCCAGCACACCUUGGGACCUUUCCAGAUGAUGUUGGGAUGGCCCAGGCAAGAGUAUUCAGGCAUAAUGUUUUGCAAAGCACUGCGAAUGAGAUAGUUAGGCUCGGUGAUCAGGAUAACCAAUCUUUUGAGAUUCUUCUUCGUUAUCUUGGGGAAGCAAAGGAGGAGAUUGCCAAAGCCGCUUCCAAGAUGUCUGGUGCUGCGGCCAGUUUUCAUUUCAUUUCAUUUCAGAUGUUUUCAUUUCAGAUGUUUCAGUCUCUUAAUGGAAUCCAUGCAACUGUACCUUUCGAGCUUUUCUAAUCUAAUUAAUGUGAAAUUUGCAAAUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

129

LEP:

26.22%

ME_num:

112

MEP:

22.76%

HE_num:

250

HEP:

50.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.72

Avg Expression:

25.59

Tip: OSA-LNC9272442 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN3.185467131447453.4345176526116e-23
2Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h8.755871941732095.78300096694557e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN3.255031415745981.05087119290933e-26
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.681691396773831.71023166986657e-16
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA2.046733275020283.14019254023805e-06
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.78603477706587.68131382879126e-15
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.893314103342557.65527178267056e-06
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA2.968121905094233.40366893332087e-21
9WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h7.900467619428431.25773600954938e-07
10Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.96047600278555.44920498233399e-07
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA2.144680101009541.192643871718e-09
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN3.118252337608974.66827453945635e-24
13Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA2.74119743236793.52778688721279e-15
14Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA2.323230011154032.91803069179857e-13