Chr:
Chr3
Start:
12606059
End:
12610111
Strand:
-
Ref_name:
LOC9272395
Sequence
(XR_001544694.2):
CCACUCCCUCACCACGCGGCCGCCGCCCCACCCACGCCCCGUGCUCGGCGCCGGCGCCGGCGCGGGACUCCCCUCGCCUCCGUCCGCUCUCCCCGAGUCACCUCCGUCGUCGUACGCCCUCCACCCGCCGCCGCCGACGUCGUCCGUCCUCCCCCCGCUCUCCGUUGCCUCUCCUUGCAGGCCGUGCGACGGCGCGGCUCGUGGCCUCGUCUCCGGUGCCACCGUAGCUAGAUCUGGCCCUCCCACGGCUGGAUCUAGCUCCGCCGCCGCUGGAUCUAGCGGCCGGAGGAGACGGCGCGACGGAGGAGGAUGGCCGCGAUAGCUUCGGACGACGAAGCGGCGGAGGCCGACAGGUGCGGCACCAUCGUCCGCCUUCCCCGCGAGGGGUUCCGCUGCCGCCACCGUCACCCGUCGCCUCCGCAUGCCCACACACACCACGAUCUGCCGCCGGUGCCUCCUCCCUCCUUACCCCUCCCCUUGUGGUGACGUCAACGGGACGGAAGGCGGACGCGUCCAUCAAGGCUUGAGGUGGCGGCGGAGCUGACCACGCGACCGCCGCCCGUCGGAGCCGGUACUCCCUAGCCCCUUCUUCAUGCGCCACCGCCGCCUCCUCGUUCUUCCCUAGCCGUCGUCACCGCCCGUACUCUUCAUCUCCCCAAUGCCGCCGCUUCCUCUCUUUUGCCCUGUCGUAUAGCAGGCCAAACGGGCGGCCCGGCCCAGCACGGCAUGGCACACUGACGGCACGGCCCACUAGGGCACGGCCCGUUAGGCACGGCUCCUAUAGCGGGCCGUGCCGUGCUGGCCCACGUGCCAAGGCCUCGGCCCAAGCACGGCCCAAGGAGGUGCUGGGUCGUGCCGGGCCGGCACGGCUACUGUAGUGGACCGUGGGCUGGUAGCCGGCCCACUAGUACAUGUGGCCCAUAAAAAUUGAAAUUUGAGGGGAAAAAAGAAAAAAAAGACAGAAAAAACAUUAUAAAUAUAGGAUAAAUGUGAGGAAAAUUUAGGAAAUAUAUCAUAAAAUAUAUGGUACAAAUAGGAUAAAAUGUGGAAAAAAAUAAAAAAUAUGAGAAAUAUAUGGGAAAAAUUAGAAAAUCGUAGGAAAAAUAAAUGGGUCGGUGGGCCGUGCCAUUCCGGCACGCUAAAGUAAACGUGCCGUGCCGUGCUGGCCUACGGGCUGAGGCGUCGGCCCAAACACGGCACGGGAUAACGGGCCGUGCUGGCACGGCCCACAGGCUGGCGUGCCGUGCCGGGCCUUGGCCGGCUACAGUACUGCCGUGCUCGGGCCGGCCCGGCUUGGCACGGCCCAUUUGGCCAGGUAUACCCUCUCGCCUCGCUCGGUGGGGUGUCGGAUUUGACGAGCAAGGUCAGCGGCGAGGAGCAGGGCCAGCGGAUGUGGCAAGGUGGCGAAGGCCUCAGCAGCCGGCGGUGGGCGCUCAAAGCGGACGAAAGCGAGGCCGCCGGCGGCCCCAUCAACCGCCCUACCCACCACCCCUAACCCCCCGCGCCAUGUCGUCCUCCCGCUCAGGUGCCUAUUUCCACCCCCCCCCCCCCCCAACACCCGUGCCUCCUGCCGCCGUCGCUCCCACCCCACCACCGGCGGUCCUCUUCCUCCCGGUCGACGUUGCUAGCCGAUGCCCCUUCUACCUGACGACCCUAUGGCUGCAGUCUGUACCGUCCCAUAUUCUUCCAGCCAAGGUGGCACCCAUCCUCCGCGCCGACGCUGAGCCGUCCUCGGGGAAUGCCGGAUCUGGCACCUUGUCGCCGGAUUGGCCCCGGUCUAGGGCCGGACGAUUGCAACUCGCUGUGGCUCAAGUUUUGUUGUCGGCUCUUCCUCCUUCCGAACCGACGGACGCAUUGGUUGGAUGACAGCAGACAUCAGCCCAUGAUUAAGCGUUGCGGGCGGCGACGACGACCUUGCUGUAUCUGUGUUAUGGUGUUUUGCCACACUUGACUUUAUUAUUAACCAGAUCUACAGUCCUUGACAAUACUCCUACUUCGAAGCAUUCAUUGGAUGAUCGCAGACCCUUGAUCAGUAAGCAACCGAUUUAUGGCUUGUGGUUGCUGCUUGAUCUCCUCACCUCUCUUGCAGGGGUAAGAAAAAGCAAUGUACGAAGCACCAUAAAAGGUAAGGAGGUGCUCCAUGUAAGGACUUUGGAGUUGCUGGCAUAGCAGAGAAUUGAAUGACUCUGCUUUUCUAAGUGCAAGCAAUUGUGUUCUUUGGGUUUUAUACUAAUUCUCAAACUUGAUGAUAUUGGGCUGGUCGCCUCUAUAUUUGCUAACUCAAUAGAGCCCUUUUCCGUUAUAGCAUCUUUACUUUCCAAAUUUUUUAAUUUGUAAUUUCUUUUUAUAUGAGCAAUUGGUACUAUGAAUGUACGAGACAUAUGGUCCUACAUCCUGUAUGUCUGGGGAACGGGAAUUGGUUGGGAAAAAAAGUUACCAUGUGGACUUAUUUUUUGUUAGGCUCAUGUUGUUCAACUAGCCCUGAUAGUUUCCUAAAACUUUGUUUAAUUUAAGAAGCUAUGUAAUGAUUCUAUUUUUGGUGUACAAGAUAUUGGCAUUAUGUUACACAUAGAUGUGUUUUGAAAGCUAAAUAAAAUUACAUAGCAACAUUUGGUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.22%
ME_num:
MEP:
57.32%
HE_num:
HEP:
41.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.59
Avg Expression:
16.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -1.6517198620954 | 0.043814140754036 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.2705360724107 | 0.00011868289940879 |
3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.09278566197545 | 0.0143490473367598 |
4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.08104655775583 | 0.00224207656923709 |
5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -1.03891774439694 | 0.0242055798014355 |
6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.24138882601198 | 0.0136619874178891 |