RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC9272372

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

7287794

End:

7290639

Strand:

+

Ref_name:

LOC9272372

Sequence
(XR_001546499.1):

CAUAACCCACCUUCUUCCUCUUCUUUUUUUUUUCUCGUUCUCUUCCUCUCCCUCACGCUCCACCCAGCGCCGCUGCUUCCCAGGCAGUGCCGUCGCUCUCCCCUGCGCCUGCUGCCACGCCCCACUCCGGCGACCCUUCUAGCCGCCGCCCCGCAACCGUCGCCGGCCUGAAUCGGUUUCUUGGCUCCUCGCUUCUCUGCCCCUAAGCUAAUCCCAGCCACCGGUCUCUUGCUGCUGCAGCCGCCGUGGAGAUGGCCGGUGGAAACACAGCGCACGCAACUCCGGUGGCUGCAUCCCUUUCCCCCAUAGAUUACCUUGUUUGAUGGUCCUACUGUGGCUGUGGAAGACUGAUGAUCAUGUGACUCUCUGGUUCUACAGCUUCUUCUGGAAUUGGUCAGGGUGUUGCUCUCCUCCUCUUGUUUACUGCUGCUCUUCUGGAUUCUGCUACUUGUUUCUCCUCCUUAAAUUGAAACCCCUUGCUCUUCUUGAAACACAUGCAUCCCCUUUCUUUUCCUUCUACUCACUCACCCUGGUUGUUUUUCUAUGGCUGCUGCUAUUGAGAUAUGGUGUAACUGUGGUGCCGGAUUACUAGCUACUGCUCUGCUAUUUCUCUCUUUUGAGGUGGUUUUCCAGAUGAAUUGCUUGCUGCUAUUGCUGUUGUGGCUGAGGCUACUGCGCCAUGGCUGUCCCCUAUGCUUGUUUCUGGGAGCAAUGGCAUGGUGUGAAGGGAAGACAUGGUUGGGUUUAUUUUGGGGAGAUUUUGACUAGUGACUCACCUACCUCAUGCAGGAAGAAUGCAUGCUUGAAUCCUGGGCGUGCGUCCCGUCGAAGCGACAGAUGAGGCACUCUUGGUGGAUACCUGCGAAGAACCUUUACCUGAAUUUGCAAGUCGUGGGGGAGGUGGUUUUGGCGCUGUAAAAACUCCGGACGCAACUGGUCGCUUGCUCGUUGGUGGAGGCGCCCAGAAAGAGAUAGGCUCGGGUAGCCUCUAAGAUGGCUUCGCCCGCGGCGUGUGUGUGCUCGCCUUGUUCUUAACCUGUUGAUCACCCCCUGCAAUUACUUCUCUGCAAGCAUAGCAAACUGAAACAACUGGUUGACAGUUUUAAAUUCCUUAUUAUCAACUAUGUCCUGAAUUUCGCACCUCAAUUCCGAGUAAAAAUGACAAAUAGAAUCUUCGGUUCCCUCCA

Sequence
(XR_003242752.1):

CAUAACCCACCUUCUUCCUCUUCUUUUUUUUUUCUCGUUCUCUUCCUCUCCCUCACGCUCCACCCAGCGCCGCUGCUUCCCAGGCAGUGCCGUCGCUCUCCCCUGCGCCUGCUGCCACGCCCCACUCCGGCGACCCUUCUAGCCGCCGCCCCGCAACCGUCGCCGGCCUGAAUCGGUUUCUUGGCUCCUCGCUUCUCUGCCCCUAAGCUAAUCCCAGCCACCGGUCUCUUGCUGCUGCAGCCGCCGUGGAGAUGGCCGGUGGAAACACAGCGCACGCAACUCCGGUGGCUGCAUCCCUUUCCCCCAUAGAUUACCUUGUUUGAUGGUCCUACUGUGGCUGUGGAAGACUGAUGAUCAUGUGACUCUCUGGUUCUACAGCUUCUUCUGGAAUUGGAAGAAUGCAUGCUUGAAUCCUGGGCGUGCGUCCCGUCGAAGCGACAGAUGAGGCACUCUUGGUGGAUACCUGCGAAGAACCUUUACCUGAAUUUGCAAGUCGUGGGGGAGGUGGUUUUGGCGCUGUAAAAACUCCGGACGCAACUGGUCGCUUGCUCGUUGGUGGAGGCGCCCAGAAAGAGAUAGGCUCGGGUAGCCUCUAAGAUGGCUUCGCCCGCGGCGUGUGUGUGCUCGCCUUGUUCUUAACCUGUUGAUCACCCCCUGCAAUUACUUCUCUGCAAGCAUAGCAAACUGAAACAACUGGUUGACAGUUUUAAAUUCCUUAUUAUCAACUAUGUCCUGAAUUUCGCACCUCAAUUCCGAGUAAAAAUGACAAAUAGAAUCUUCGGUUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

99

LEP:

20.12%

ME_num:

202

MEP:

41.06%

HE_num:

190

HEP:

38.62%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.67

Avg Expression:

10.17

Tip: OSA-LNC9272372 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.289326668654860.0294596043201832
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min"-1.110148941095220.0439349305011264