Chr:
Chr7
Start:
27823819
End:
27824540
Strand:
-
Ref_name:
LOC9272302
Sequence
(XR_001547593.1):
UUUGUACCUUUGCUACAACUAUCUUCAACCCCUGCAAUUCCUUAUCCCCCCUUCUGCUUAGAGCUAUGUGAGAUCCAAAUUUCCAGGUACUCCAUAAAAAUGGCCAAAGUUCUACACUACUAAAGCAACAAGAGCAAGGGCACUUCCCAAUUAUCCCCAACUUCGUUUCUAGCUCUUUUUGGUGUGAUUUGAUGGUGCUUUGGAGGGUGGAGGUGUUCGUGUUGGAGAUGGUGUGGGUGAUGCUCAGCGGCUGGCUCUCCUCCUGCCUCGCCGUCGCCGACUACGUCGCCACGGCGCUCAGGCAGAGUGGUGACGACGUCUCCGGCUAGAAUUUCUUUGGACGAACUGGAUAUAAAUCAUCUUCCAUGCCUGCAUUUGUUGUUUGGUUUCUUUGUGUGUUUGUGAGCAUUUAUACACAUUGCAAUUGUGUAUAUAUCCGAAUGUUAUUUUAAUUUUUUUUUGUACGACAUGAUUUGAGGCAAAUUAAAAUAGAUUGCAAUGGAUAUUUCUCAAAUUAUCUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.43%
ME_num:
MEP:
17.07%
HE_num:
HEP:
68.29%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.89
Avg Expression:
305.34
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.44726230326015 | 1.53594210987788e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.87141625831071 | 2.1288699629699e-08 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.39463667421572 | 0.00141346480746417 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.37101329415309 | 4.06738518216177e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.5529597348529 | 5.88708759655454e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.48505404111085 | 8.33791847177778e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.46676752672182 | 3.58288649019607e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.18563747981845 | 0.0225559580903489 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.57545586915881 | 7.63800892711141e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.13064515509047 | 1.89969599136982e-09 |
| 11 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.77943549324473 | 3.58590398828462e-12 |
| 12 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.69085822071677 | 0.000350346792374958 |
| 13 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 4.2378400346336 | 1.56248403794934e-44 |
| 14 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 3.91459801905668 | 3.92831348116251e-31 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.01565972412392 | 6.71070827344341e-11 |
| 16 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.46964891205965 | 0.000182818424977175 |
| 17 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.80809021465318 | 1.4880659611117e-07 |
| 18 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.42686858935122 | 6.80359660127354e-11 |
| 19 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.96195051247592 | 4.64245358397456e-10 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.43448740088688 | 4.37699317717191e-07 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.21943401082619 | 4.54318783813261e-09 |
| 22 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.37680987818073 | 3.05829483362171e-21 |
| 23 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.37672491402977 | 3.87399840902842e-21 |
| 24 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.37664141800668 | 3.19730727767315e-21 |
| 25 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.5428214505796 | 1.91230323980916e-15 |
| 26 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 6.99386263948899 | 2.13758445206693e-17 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.41596701811029 | 8.55426249661503e-08 |
| 28 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.10900583068856 | 8.67700574107218e-20 |
| 29 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.22092645795801 | 0.00203173549572979 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | -1.16190955496227 | 0.0406781312032977 |