Chr:
Chr3
Start:
22261501
End:
22266776
Strand:
-
Ref_name:
LOC9272293
Sequence
(XR_001544402.2):
UUCAGCUUCAGGUGGGUGCGGCCAUGACACUGUCAGAAACGAGAUCGAGGCCCCCCUCACAGUCGCGGCCACCGCCGAUACCACGCGCUAGCUCGCCGCGCCGCCGCCUGCUUCCGACUCGCGUCCGCCAUCGCCAACCUAGAAGCUAGCUAGAGGCUUACGAGGUGUUCUCGUGAUCGAGGGCCGUUCGAUCGCACUGGAUUGGGAGGGAGGGGGACGGCGUCCUGCAGUUUUUCGACAGAAUGCGUGGCAAGGGAUCACACAGAACUCAGGGAGACGAUGCAAAUUCUGCGAGGCGGACAUCCAGCUGUGGAUACUCUCAAAACGAACGGCAAACUGAGGGCUGGCACAAAGGACAAAAGACACAUAUUGCUGGCAGCUAGCUGCUUCAGGAUGUGGUGCUGGUGGAUUUGCCAAGGCAGGGGGCGUGGAUAUCAGUGGUGGAAUUCGUCAUAUCCUUGCUUCUUGCGUAAUUAAGGUCGUCAAUACAGGUCGUAGAGAGAAGGUUGUUUGGUCUCUGGGAGAUAGUAGUAUCUGAGUAUUGCAGUUGCCGUCUUUGGUGAGGAUUAUUAGGAUUAGCCGUGAGUCCGGAGGUUUUGUUGUAGGUGACAAACCUGGAGCCUAGGAUUUUCAGUUGGAUGAGAACAUUCUAUAUCUUACGUGGGUUCUCAUUUGCAUGGAUUUUUUUUAUUGUUUGCUAACUUUUUAAAUUUUAAUUUUACAAAAAACUCUUCUGAAACCUAUUUUUAGUUCUAAUUCUAAAUCUUUUUGCCAGGCUAGUCUUGGUGGCAUGGCAAAAUAACGUUGCCACGCACACCCACGGCGGACAUGUCAGUGUUGUUUUACCAUGCCAACCUAGAUGGCGUGGUAAAACCUUUGCCACGCGGUGGUGUGGCCAUAUAAUGGUUCCAUGUCAAGGGAUUAGUGUGGCAAUAAUGUUUUGCUCGACAUUAGUGUAGUCAGAUGGUUUAGAAUUGAAAAUAAAAUUUGAGAGUAUAUUUACAAAAAUUUAAGUAGAAAAGGUUAAAAAAAAUAAAAAUAUCUUCGCGAAAUGAUGUACAACAAAUAUAUUUGUUGUUUCAAGUAAAAUGUACGGUCUAGGACAAAUUGCGGAGUGGCUGCGAUUUAGUACUACAGUAUGAGAAUAACUGUAGAUACACAACUUGGCUUGUGUUGCAAAACAAAUUACAAAGCAAAAUGUUAGGAUUUUUUUUACAAUCUAUUUACU
Sequence
(XR_003241272.1):
UUCAGCUUCAGGUGGGUGCGGCCAUGACACUGUCAGAAACGAGAUCGAGGCCCCCCUCACAGUCGCGGCCACCGCCGAUACCACGCGCUAGCUCGCCGCGCCGCCGCCUGCUUCCGACUCGCGUCCGCCAUCGCCAACCUAGAAGCUAGCUAGAGGCUUACGAGGUGUUCUCGUGAUCGAGGGCCGUUCGAUCGCACUGGAUUGGGAGGGAGGGGGACGGCGUCCUGCAGUUUUUCGACAGAAUGCGUGGCAAGGGAUCACACAGAACUCAGGGAGACGAUGCAAAUUCUGCGAGGCGGACAUCCAGCUGUGGAUACUCUCAAAACGAACGGCAAACUGAGGGCUGGCACAAAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.39%
ME_num:
MEP:
25.2%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.93
Avg Expression:
4.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.487396033589 | 0.0322859613211619 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.22117822810399 | 0.0401352940224607 |