OSA-LNC9272293


Function Link


Basic Info

Chr:

Chr3

Start:

22261501

End:

22266776

Strand:

-

Ref_name:

LOC9272293

Sequence
(XR_001544402.2):

UUCAGCUUCAGGUGGGUGCGGCCAUGACACUGUCAGAAACGAGAUCGAGGCCCCCCUCACAGUCGCGGCCACCGCCGAUACCACGCGCUAGCUCGCCGCGCCGCCGCCUGCUUCCGACUCGCGUCCGCCAUCGCCAACCUAGAAGCUAGCUAGAGGCUUACGAGGUGUUCUCGUGAUCGAGGGCCGUUCGAUCGCACUGGAUUGGGAGGGAGGGGGACGGCGUCCUGCAGUUUUUCGACAGAAUGCGUGGCAAGGGAUCACACAGAACUCAGGGAGACGAUGCAAAUUCUGCGAGGCGGACAUCCAGCUGUGGAUACUCUCAAAACGAACGGCAAACUGAGGGCUGGCACAAAGGACAAAAGACACAUAUUGCUGGCAGCUAGCUGCUUCAGGAUGUGGUGCUGGUGGAUUUGCCAAGGCAGGGGGCGUGGAUAUCAGUGGUGGAAUUCGUCAUAUCCUUGCUUCUUGCGUAAUUAAGGUCGUCAAUACAGGUCGUAGAGAGAAGGUUGUUUGGUCUCUGGGAGAUAGUAGUAUCUGAGUAUUGCAGUUGCCGUCUUUGGUGAGGAUUAUUAGGAUUAGCCGUGAGUCCGGAGGUUUUGUUGUAGGUGACAAACCUGGAGCCUAGGAUUUUCAGUUGGAUGAGAACAUUCUAUAUCUUACGUGGGUUCUCAUUUGCAUGGAUUUUUUUUAUUGUUUGCUAACUUUUUAAAUUUUAAUUUUACAAAAAACUCUUCUGAAACCUAUUUUUAGUUCUAAUUCUAAAUCUUUUUGCCAGGCUAGUCUUGGUGGCAUGGCAAAAUAACGUUGCCACGCACACCCACGGCGGACAUGUCAGUGUUGUUUUACCAUGCCAACCUAGAUGGCGUGGUAAAACCUUUGCCACGCGGUGGUGUGGCCAUAUAAUGGUUCCAUGUCAAGGGAUUAGUGUGGCAAUAAUGUUUUGCUCGACAUUAGUGUAGUCAGAUGGUUUAGAAUUGAAAAUAAAAUUUGAGAGUAUAUUUACAAAAAUUUAAGUAGAAAAGGUUAAAAAAAAUAAAAAUAUCUUCGCGAAAUGAUGUACAACAAAUAUAUUUGUUGUUUCAAGUAAAAUGUACGGUCUAGGACAAAUUGCGGAGUGGCUGCGAUUUAGUACUACAGUAUGAGAAUAACUGUAGAUACACAACUUGGCUUGUGUUGCAAAACAAAUUACAAAGCAAAAUGUUAGGAUUUUUUUUACAAUCUAUUUACU

Sequence
(XR_003241272.1):

UUCAGCUUCAGGUGGGUGCGGCCAUGACACUGUCAGAAACGAGAUCGAGGCCCCCCUCACAGUCGCGGCCACCGCCGAUACCACGCGCUAGCUCGCCGCGCCGCCGCCUGCUUCCGACUCGCGUCCGCCAUCGCCAACCUAGAAGCUAGCUAGAGGCUUACGAGGUGUUCUCGUGAUCGAGGGCCGUUCGAUCGCACUGGAUUGGGAGGGAGGGGGACGGCGUCCUGCAGUUUUUCGACAGAAUGCGUGGCAAGGGAUCACACAGAACUCAGGGAGACGAUGCAAAUUCUGCGAGGCGGACAUCCAGCUGUGGAUACUCUCAAAACGAACGGCAAACUGAGGGCUGGCACAAAGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

366

LEP:

74.39%

ME_num:

124

MEP:

25.2%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.93

Avg Expression:

4.67

Tip: OSA-LNC9272293 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA3.4873960335890.0322859613211619
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA3.221178228103990.0401352940224607