Chr:
Chr7
Start:
4467196
End:
4468969
Strand:
+
Ref_name:
LOC9272289
Sequence
(XR_001547200.2):
AAUUUAAGUAUUUGUCACUCUUGUGACAUAGUAAUUAACGAUUUGCCACAUCGUAUCUAUAACAUGUGGAUUCUCAUGUGUUAUAACAUAUGGAACUAGUGGCAAAUCAUACGAGUGGCUUACGAGUGGCAAAUAGUUAAAAUCCCCCAUUCUCUCCACCGCGUCAUGGCCUGCGACGGCGCCGCCGUUCCCCUUUCAUCUCGACCUCGGGCACGCAGCUCGCGUCACUCGCCGUCGUCGCUUCCCAGCGAGGCCAUCCACGGCCACCGUCGCUUCUUCCCGGAGACCGCCGCCAUCUCCCCACCCCCGCGUGACACCACUUCUUGCCCUCUCCAUCUAGGGUUUUCUCGGGCCUCGAAUCGCUAAAGCAUGUUCCGCUGCCACGGAGGACAGGGAUGCCCCUGUGCUUCUAUUAUCUCCACCAAGGAGGCUGUUGCAUUCCAGAUCUCCCUGUCGGGCAAGCUCGGGAGGACGCUACAUUGAGCCAUGAUGACUGCAAUACUUCUAGGCCUUGAGAAGAGGAUUUGGACCACUGGUGGUUCUGACCAAGAUUUAACGGUAUGUGUUUUUCUGUAUGUUUUCUUCCUUGUAGUGUCUAUUCCCUUCCCCACGUCCUGAUGAUUACUUGCUCAAGCUGUUUGAUUAUUGUUGCAGCAGUUACACCUUCAGUUGACCACUCAACCAAGGUAUCGAUCAGUUUUGGUCCAAAACAUAUGUUUAUUCUCAUGCAUCGAUUUGCAAUGACCAAAUCUAUGCUUCGAUCUUUUAAUUUGCUACAGUUUUCCCUGCUUCUCUAAUCAGUACCAUUACAGAUUUGUCUCUGUGACUGCUUACUGUACUUUCAAAUUGCUUUACAGUGCAUGCACAAGUCUGUUGCCUAUUUUAGUACUAGCCAAUAUAUAGAUGUUCCCAACGAACAUGGUAAAAAUAUUCUCUGCAAUUCUUUGCUUCUAUAGAUUCUCAUGCAUACGAUAUCUGAUCGAUAUCCAUGAAUCCAUCCUUCUUUUGCAUGGUUUUCAUUUUCAGAACAUUUCAGCUUUCGGUAUAUGAAGCUCAAGAAUGAAGUGACCGUUGUCUGGCUUGCAACCUUUCCAGGGUACAAAUCAAUCAGUUUGGAUAUGGAACACGCAUUGUACGGGUUGCUGCUUAUAGGUUGUUUGGAUAUCACUUAAUGGAUCAAACAAGCUUGUCAUGUUUGUUUAUAUGCAGGUGCUAUUUGGAAUUAAGUGCAGUGGUUGUACGGGUUAAUUCAAACAUAUGUAUGUCUAGAUUCGUAGUACUAGAAUGUAUCACAUCCGGUAGUAGAUUAUUUUUUUAUAGGACAGAAGGAGUAGAGUUCAGAGAAAGUGGCUAGCAAGUAGGCCCCACAUUUUUUAUAUUUUUUCCUAGGCACUUAAAUGUGGGCUUUACCUGUAUUUGUGACUGGGUUGCUCCAUCAUCACAAAGUUGACUAAGUCAAAAGGUCACGUUAACAAAACCA
Sequence
(XR_001547201.2):
GUCACUCUUGUGACAUAGUAAUUAACGAUUUGCCACAUCGUAUCUAUAACAUGUGGAUUCUCAUGUGUUAUAACAUAUGGAACUAGUGGCAAAUCAUACGAGUGGCUUACGAGUGGCAAAUAGUUAAAAUCCCCCAUUCUCUCCACCGCGUCAUGGCCUGCGACGGCGCCGCCGUUCCCCUUUCAUCUCGACCUCGGGCACGCAGCUCGCGUCACUCGCCGUCGUCGCUUCCCAGCGAGGCCAUCCACGGCCACCGUCGCUUCUUCCCGGAGACCGCCGCCAUCUCCCCACCCCCGCGUGACACCACUUCUUGCCCUCUCCAUCUAGGGUUUUCUCGGGCCUCGAAUCGCUAAAGCAUGUUCCGCUGCCACGGAGGACAGGGAUGCCCCUGUGCUUCUAUUAUCUCCACCAAGGAGGCUGUUGCAUUCCAGAUCUCCCUGUCGGGCAAGCUCGGGAGGACGCUACAUUGAGCCAUGAUGACUGCAAUACUUCUAGGCCUUGAGAAGAGGAUUUGGACCACUGGUGGUUCUGACCAAGAUUUAACGCAGUUACACCUUCAGUUGACCACUCAACCAAGGUAUCGAUCAGUUUUGGUCCAAAACAUAUGUUUAUUCUCAUGCAUCGAUUUGCAAUGACCAAAUCUAUGCUUCGAUCUUUUAAUUUGCUACAGUUUUCCCUGCUUCUCUAAUCAGUACCAUUACAGAUUUGUCUCUGUGACUGCUUACUGUACUUUCAAAUUGCUUUACAGUGCAUGCACAAGUCUGUUGCCUAUUUUAGUACUAGCCAAUAUAUAGAUGUUCCCAACGAACAUGGUAAAAAUAUUCUCUGCAAUUCUUUGCUUCUAUAGAUUCUCAUGCAUACGAUAUCUGAUCGAUAUCCAUGAAUCCAUCCUUCUUUUGCAUGGUUUUCAUUUUCAGAACAUUUCAGCUUUCGGUAUAUGAAGCUCAAGAAUGAAGUGACCGUUGUCUGGCUUGCAACCUUUCCAGGGUACAAAUCAAUCAGUUUGGAUAUGGAACACGCAUUGUACGGGUUGCUGCUUAUAGGUUGUUUGGAUAUCACUUAAUGGAUCAAACAAGCUUGUCAUGUUUGUUUAUAUGCAGGUGCUAUUUGGAAUUAAGUGCAGUGGUUGUACGGGUUAAUUCAAACAUAUGUAUGUCUAGAUUCGUAGUACUAGAAUGUAUCACAUCCGGUAGUAGAUUAUUUUUUUAUAGGACAGAAGGAGUAGAGUUCAGAGAAAGUGGCUAGCAAGUAGGCCCCACAUUUUUUAUAUUUUUUCCUAGGCACUUAAAUGUGGGCUUUACCUGUAUUUGUGACUGGGUUGCUCCAUCAUCACAAAGUUGACUAAGUCAAAAGGUCACGUUAACAAAACCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
7.11%
HE_num:
HEP:
92.68%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.67
Avg Expression:
36.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -1.59413312557887 | 0.00135684641903459 |
2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.61915275835918 | 0.000676976865000445 |
3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.61137858836957 | 0.000947679530482731 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.15576634586726 | 1.39019560472609e-14 |