Chr:
Chr9
Start:
3494331
End:
3496496
Strand:
-
Ref_name:
LOC9272125
Sequence
(XR_001540138.2):
UAUCUGCCUUUUCCUCGAAUACAUUUCAUCGAACACCUUGUGAGCAUGCUUCAUCAUCACUGGUUGGAGCCGAAGCCGGCGUAGCUGACCGCGGGAGCUGUGGCUCGGGCCGCCUCUACUUCUUCUGCUGCCUUGCAUCAACGCCGGGAGCCGCUGGACGUCGGGGAGAGUGCGUCGAACACCUGCGUGCGCUGCCGACGUCGAUUCGCCCCUGCUUCACCCGCACCGUGCCGCGCAUCACCGACCUAUGCCGUUGCUCCACCGCACGAUUCCGAGGGAGUGGUUGAGUUGACUGCAAAACAAGGACAGCAAGACAGUGAGCAAGGCAAGUCAUCACUAAUCUUUGAGCAUAUUGGACCUAUUGCGAACUUAUUUUGAUUUAAAUAAAGUUUGCAUGCUAUUUAUAUGUGAAUGUCCUACUUUGUUAUAUGCCAUACCUUUGAUAUUGAUUAUCCAUACAAUCUUUGUAAUCCAUAAUAUCGUGUGUUUUUAGUCAAUGCUUGACCAAAGCAUGGGUAUGAUUUGACUGAUAAACCUGAUGUUUUAUUAUUUUUUUUCUUUUUACUUCUAACUUGAUUGCCAUUUUUUUUGAGAAUUCCUUCGUAAAUCCCACAGCAAAGCACGGGGAAUCACCUAGUCAAUACUCCCUCCUUCCAAAAGUCUCAGUCGUAUUUGGUUUUCUUGUUUUUCCAGAUGAGAUGGGCGCAUUCCACUCUGCAUGCAUGCAUGCAGGCUUUAAAUGUGUAGCUGGUCUCUUCGUUAAACAUGCAUGGAUUUAAUUCCUCUCAGCAACCGAACAGUAUUCUUUUGCAUGCAUGCAAAUCCAUCCGUUGCCUAUUCGCGAGCGGUGGGCGCGGACGGUUGCGGUGUUGCACACACGCGUAUCGUGCAUCAACCGAAGCGUCGCUUCCUCUAAAUCCAUGCAGAUGUAGCGAUGGUUAAAUGCGUCGGAGAGUUCCUUGGUCUUGGAGCAAAACGUAAUACGACUGAGACUUUUGGAAGGAGGGAGUAUAUAUGAGUGAGACCAAUGUUUACUUGAACUUUAUCUUAUUUAGUCUUCUUUACAUUGAGAACAUCAACAUAAUGAAGGUUUGUAUUUAUGUGUCUUUAUUAUUGCUACAUGCGUUCUCCAUGUGUAGGGAACAAACCCCAUUGGUUUUUCUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.32%
ME_num:
MEP:
40.24%
HE_num:
HEP:
27.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.89
Avg Expression:
102.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.76719973839843 | 0.00104927944125628 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.94934705318711 | 5.33766183229178e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.72791153157323 | 3.8058865408831e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.62964680624275 | 9.97967334488696e-21 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.32917424078306 | 6.00073256845492e-17 |
| 6 | Azucena // root // control--/--Azucena // root // Al | -1.14473519393892 | 0.0423697935270164 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -4.71277323598086 | 0.00349098756900766 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.42445162938067 | 0.00119309923310004 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.11582482516934 | 2.12415064204854e-07 |
| 10 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.09168921105677 | 4.90276686955657e-10 |
| 11 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 3.91580775943788 | 1.30577095376813e-08 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.84482734600211 | 2.51056902934457e-14 |
| 13 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -2.7831373416732 | 5.98315076294005e-06 |
| 14 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -3.54305976424512 | 8.43658117908867e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.32433985792937 | 1.34707935918542e-06 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.88926669700991 | 2.23613113311001e-73 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.56585333925731 | 9.40190948232752e-15 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.20531983673996 | 0.0286733943002935 |