Chr:
Chr3
Start:
35431567
End:
35432524
Strand:
+
Ref_name:
LOC9272033
Sequence
(XR_001544328.2):
UAUUUCUACGUGAGCCCUUCCCUUUUGGAAUAACUAUUAUCUUUCACGCUCCUCCCAAGCUUUCGAUUCUGAACCAGAAUUCCACGGUGAAUCGAUCUUCCGACGCCAGAUCGACGCGAGUUGAGAGACGGCCGUGCUCAGGACGGCGGAGCGCCGGCGAGAUGCGGAGGCGGCGGCGCCGCCACCACGCGCGCUCCUAGGUGAAUCUGGCGAUCGGGAAGUUGUUGAAGGAUGUGCAAACCCUCAAUCAUAGAAGACAUUCGGCUAAGAGAGCUCGAAGGAAAAAACCUGCUCGAGUAAAGAUCCGGUCGAAUGGAAGAUUCUGUGGGGGCCGUUUCUCAACCACUCUUGCCAGCUGGAGCCAAAAGACUAGAAUGACCCUGAGAAUGUACUAAAAUACCCCUAGGGUUGCUGACAUGGCAAGGGCAUUAUAGGAAGAUCACUAAAGCCCAUGAGGGUAGAAAUGUAACAUCACAUGUAAGACCGUAGGCUAUAAAAGCCGGUCAAGUCCCUAUAGCUAGAGGAGACAUUUUUUAAUACAAAAAGUAAUCCUCUAAAGUGGUGUUUGCUGUUUGAGCUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.48%
ME_num:
MEP:
66.06%
HE_num:
HEP:
16.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.69
Avg Expression:
6.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.44773798431075 | 1.62274742216624e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.47982559096185 | 0.000162599126453713 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.80593858454608 | 6.20923639333896e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.41276037153657 | 0.00217142612455999 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.62312039374529 | 0.000112977607713048 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.79541739792218 | 2.19818336915669e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.8006766752413 | 7.90920055702306e-12 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.17516137788337 | 0.00256455502618225 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.52204157607715 | 9.73921277335099e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.5316455850202 | 1.43715307287902e-10 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.24537109166022 | 0.0036308643494788 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.48503684318225 | 0.00116646071205795 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.51720262561636 | 3.03025915528679e-11 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.72674762078037 | 2.92818994343439e-15 |