Chr:
Chr6
Start:
11055805
End:
11065425
Strand:
-
Ref_name:
LOC9272020
Sequence
(XR_001546747.2):
GGUUUUUUUUUCGCAGAAUAACAUCCACUAAACCCCCUAAACCCUCCGCCUCCCCCUCGCGCCGUCCCCGUCGCCUCCGCCACCGCCUCCGCCGCCGCCGCUGCCGUGUACCGCCGCCGUUCAAAUUAUUCCCCUCUUCCGCUCCACUCUCCCGUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCACACAGAGCACGCAUCCGCCACCCCCACACGGGAGCGGAGAGCUCGCCGCCGGCGAUCGCCGCAGGAAUCCGAGGGUUUCUUCCUGCGUCCGCGGUAGAUGGUUCUGCUCGAACGAUCGCCGUUGGUGGUGCCGGAGGCAGCCGCCGCUGCCGCCUCCAGCCCGCUCCGGAGGCCGUCGCCUAGGGUUCGGAGGGAGGUGCCACCCCCUCCCCUCGAUCCCAUCCUCCCCUACCUUCAGGUCUAUCAACAAGGCUAUGGAUGAGCUCAGGAGAGGCCCAAAAUUUGAAGCAGCAGCCCUUGAUUGGCUCAAGAUUUGUGUAAUGGAAUGCAUUGAUAAGUAUGGUGACGAUUACCAGUACUCCACAGACCCCCGACUCCUCAAGAUCUGGAUCCUCUAUGCGGAUGCAUUAUGUUUUUGUUGAAGUGAACUUUUUGGGCAGCAAUAACCUGAUGUCAAAUUUGCCAUGUUGAUGUGAUCGCAAACCAUUUCUGUGGUACCAGAAAAGCCGAGCCACUUGAUCAUUUGAAGAAGACACAUACAAUAUUUUUAAAACACUUGGAGAAGAUUGUAGAAGAAGCUGAUGCCGAUGCCCAGCCGAAACCAUCCAAAAUGCAAAAGAAAGAACCUAUUUUGCUGGAUCCAUGGUCUGAGUCUACUAUGAAUAAUUUAUUGGAGAACAUUAAUGUUGACCUGAAGAAGUUCGCUGGCUAUCAUCAGAGCAACAAGGUCUAUCAUGGAAAGGUGCCAUUAACUUCGCCUCAGAAUGUUUUAAGAAACAAAGUCACUGAAUUAGGUACUGGAACGUGGAGCUGUGGAAAAACCUCUUCUGCACACUGUUCAACGCGACCUCCAACAGCAGCGAAGCGGCUGUGCUCCGGAGCCUCCGGAUGUCUUUCCAGGAGUACCUGUACACCAACGGGCAGCUCGUCGGCAAGCUGAACCAGCAACUGGCCAAAUAGAAGACCUCCCUGUGCCUAUCCUGACCGAGACAUAUGCAUCUCGUUUCACCUGCAUCUUUAUUCCCGAUUCCCUUGUGUUGCCUGUGGGAUACUUCAAAAUUCUGUGCCAUUAUGCAAAGGAGUGCUAUAGAUGAGAAAAGAUUCAAUUAGUUCAUGACGAAGAUAUCUAUGAGAAAAUGUUGUCCCAAAUCCCCUAAUGAUUGCUGUUUUUUCUAACCUAGCCCACAUCAUGUAAGAUCCAUUGUCCUCUGUCAUUGCUACUUUUCUGUAAGUGUACAUGAUUGUAUAAACAAUUAUGUGAGCAAACAGAUCAUAUUCACAUUUGAAUCUUGGUGAUAGUCAUAAUGUGUAUUAGUGUAUGCA
Sequence
(XR_001546746.2):
GGUUUUUUUUUCGCAGAAUAACAUCCACUAAACCCCCUAAACCCUCCGCCUCCCCCUCGCGCCGUCCCCGUCGCCUCCGCCACCGCCUCCGCCGCCGCCGCUGCCGUGUACCGCCGCCGUUCAAAUUAUUCCCCUCUUCCGCUCCACUCUCCCGUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCACACAGAGCACGCAUCCGCCACCCCCACACGGGAGCGGAGAGCUCGCCGCCGGCGAUCGCCGCAGGAAUCCGAGGGUUUCUUCCUGCGUCCGCGGUAGAUGGUUCUGCUCGAACGAUCGCCGUUGGUGGUGCCGGAGGCAGCCGCCGCUGCCGCCUCCAGCCCGCUCCGGAGGCCGUCGCCUAGGGUUCGGAGGGAGGUGCCACCCCCUCCCCUCGAUCCCAUCCUCCCCUACCUUCAGGUCUAUCAACAAGGCUAUGGAUGAGCUCAGGAGAGGCCCAAAAUUUGAAGCAGCAGCCCUUGAUUGGCUCAAGAUUUGUGUAAUGGAAUGCAUUGAUAAGUAUGGUGACGAUUACCAGUACUCCACAGACCCCCGACUCCUCAAGAUCUGGAUCCUCUAUGCGGAUGCAUUAUGUUUUUGUUGAAGUGAACUUUUUGGGCAGCAAUAACCUGAUGUCAAAUUUGCCAUGUUGAUGUGAUCGCAAACCAUUUCUGUGGUACCAGAAAAGCCGAGCCACUUGAUCAUUUGAAGAAGACACAUACAAUAUUUUUAAAACACUUGGAGAAGAUUGUAGAAGAAGCUGAUGCCGAUGCCCAGCCGAAACCAUCCAAAAUGCAAAAGAAAGAACCUAUUUUGCUGGAUCCAUGGUCUGAGUCUACUAUGAAUAAUUUAUUGGAGAACAUUAAUGUUGACCUGAAGAAGUUCGCUGGCUAUCAUCAGAGCAACAAGGUCUAUCAUGGAAAGGUGCCAUUAACUUCGCCUCAGAAUGUUUUAAGAAACAAAGUCACUGAAUUAGGUACUGGAACGUGGAGCUGUGGAAAAACCUCUUCUGCACACUGUUCAACGCGACCUCCAACAGCAGCGAAGCGGCUGUGCUCCGGAGCCUCCGGAUGUCUUUCCAGGAGUACCUGUACACCAACGGGCAGCUCGUCGGCAAGCUGAACCAGCAACUGGCCAAAUAGAAGACCUCCCUGUGCCUAUCCUGACCGAGACAUAUGCAUCUCGUUUCACCUGCAUCUUUAUUCCCGAUUCCCUUGUGUUGCCUGUGGGAUACUUCAAAAUUCUGUGCCAUUAUGCAAAGGAGGUACCACUCAUCUACUAAUCUGUUUGCUAUAGAUGAGAAAAGAUUCAAUUAGUUCAUGACGAAGAUAUCUAUGAGAAAAUGUUGUCCCAAAUCCCCUAAUGAUUGCUGUUUUUUCUAACCUAGCCCACAUCAUGUAAGAUCCAUUGUCCUCUGUCAUUGCUACUUUUCUGUAAGUGUACAUGAUUGUAUAAACAAUUAUGUGAGCAAACAGAUCAUAUUCACAUUUGAAUCUUGGUGAUAGUCAUAAUGUGUAUUAGUGUAUGCA
Sequence
(XR_003243036.1):
GGUUUUUUUUUCGCAGAAUAACAUCCACUAAACCCCCUAAACCCUCCGCCUCCCCCUCGCGCCGUCCCCGUCGCCUCCGCCACCGCCUCCGCCGCCGCCGCUGCCGUGUACCGCCGCCGUUCAAAUUAUUCCCCUCUUCCGCUCCACUCUCCCGUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCCACACAGAGCACGCAUCCGCCACCCCCACACGGGAGCGGAGAGCUCGCCGCCGGCGAUCGCCGCAGGAAUCCGAGGGUUUCUUCCUGCGUCCGCGGUAGAUGGUUCUGCUCGAACGAUCGCCGUUGGUGGUGCCGGAGGCAGCCGCCGCUGCCGCCUCCAGCCCGCUCCGGAGGCCGUCGCCUAGGGUUCGGAGGGAGGUGCCACCCCCUCCCCUCGAUCCCAUCCUCCCCUACCUUCAGGUCUAUCAACAAGGCUAUGGAUGAGCUCAGGAGAGGCCCAAAAUUUGAAGCAGCAGCCCUUGAUUGGCUCAAGAUUUGUGUAAUGGAAUGCAUUGAUAAGUAUGGUGACGAUUACCAGUACUCCACAGACCCCCGACUCCUCAAGAUCUGGAUCCUCUAUGCGGAUGCAUUAUGUUUUUGUUGAAGUGAACUUUUUGGGCAGCAAUAACCUGAUGUCAAAUUUGCCAUGUUGAUGUGAUCGCAAACCAUUUCUGUGGUACCAGAAAAGCCGAGCCACUUGAUCAUUUGAAGAAGACACAUACAAUAUUUUUAAAACACUUGGAGAAGAUUGUAGAAGAAGCUGAUGCCGAUGCCCAGCCGAAACCAUCCAAAAUGCAAAAGAAAGAACCUAUUUUGCUGGAUCCAUGGUCUGAGUCUACUAUGAAUAAUUUAUUGGAGAACAUUAAUGUUGACCUGAAGAAGUUCGCUGGCUAUCAUCAGAGCAACAAGGUCUAUCAUGGAAAGGUGCCAUUAACUUCGCCUCAGAAUGUUUUAAGAAACAAAGUCACUGAAUUAGGGGAUACUUCAAAAUUCUGUGCCAUUAUGCAAAGGAGGUACCACUCAUCUACUAAUCUGUUUGCUAUAGAUGAGAAAAGAUUCAAUUAGUUCAUGACGAAGAUAUCUAUGAGAAAAUGUUGUCCCAAAUCCCCUAAUGAUUGCUGUUUUUUCUAACCUAGCCCACAUCAUGUAAGAUCCAUUGUCCUCUGUCAUUGCUACUUUUCUGUAAGUGUACAUGAUUGUAUAAACAAUUAUGUGAGCAAACAGAUCAUAUUCACAUUUGAAUCUUGGUGAUAGUCAUAAUGUGUAUUAGUGUAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
81.91%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.61
Avg Expression:
8.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.17672846185571 | 7.58137718926394e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.52322126441194 | 3.81116017244324e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.8765370119714 | 3.81405692411715e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.83442473696829 | 6.29623155494989e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.01134988791201 | 2.82423706231051e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.16355726905237 | 3.05084217467154e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.01599725605787 | 9.19995312777113e-07 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.54148527276592 | 0.00063388623263658 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.74560627943322 | 0.000103784509711726 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.19014280659489 | 5.43602766274161e-07 |
| 11 | 9311 // leaf // control--/--9311 // leaf // salt | -1.14751241926413 | 0.0488063604534837 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.07831553172436 | 2.39119981738115e-22 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.30460185281873 | 1.09398777873435e-10 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.94725529597421 | 0.000440149534289285 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.13324044813584 | 5.38883017742598e-05 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.15099820190334 | 1.98252360059269e-07 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.48839148184825 | 1.80648910559216e-09 |
| 18 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.82132065439954 | 1.15041692029898e-05 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.60752010123386 | 0.00116382666820648 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.93776368556677 | 1.30475497454892e-19 |